2038011000: Fungus garden microbial communities from Atta colombica in Panama - from dump top

Overview

Basic Information

• IMG/M Taxon OID: 2038011000
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045310 | Gp0051594 | Ga0011020
• Sample Name: Fungus garden microbial communities from Atta colombica in Panama - from dump top
• Sequencing Status: Permanent Draft
• Sequencing Center: 454 Life Sciences, DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 465469652
• Sequencing Scaffolds: 9
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Beephvirinae	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Fungus Garden Microbial Communities From Leaf-Cutting Ants In Gamboa, Panama
• Type: Host-Associated
• Taxonomy: Host-Associated → Arthropoda → Symbiotic Fungal Gardens And Galleries → Fungus Garden → Unclassified → Fungus Garden → Fungus Garden Microbial Communities From Leaf-Cutting Ants In Gamboa, Panama

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Fungus → Fungus corpus

Location Information

• Location: Gamboa, Panama
• Coordinates
  • Lat. (^o): 9.1167
  • Long. (^o): -79.7
  • Alt. (m): N/A
  • Depth (m): .5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000150	Metagenome / Metatranscriptome	1910	Y
F000198	Metagenome / Metatranscriptome	1648	Y
F002255	Metagenome / Metatranscriptome	578	Y
F006745	Metagenome	365	Y
F019500	Metagenome / Metatranscriptome	229	Y
F023771	Metagenome / Metatranscriptome	208	Y
F032964	Metagenome / Metatranscriptome	178	Y
F055231	Metagenome	139	N
F071942	Metagenome / Metatranscriptome	121	Y
F073159	Metagenome / Metatranscriptome	120	Y
F091073	Metagenome	108	Y
F097652	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
ACOD_contig00546	All Organisms → cellular organisms → Bacteria	93144
ACOD_F95O9CU02FK5Z3	Not Available	522
ACOD_F95O9CU02GV1XT	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	506
ACOD_FV90NF401AZYHW	All Organisms → cellular organisms → Bacteria → Proteobacteria	505
ACOD_FV90NF401C6Z53	All Organisms → cellular organisms → Bacteria	500
ACOD_FV90NF401C7I92	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Beephvirinae	532
ACOD_FV90NF401CAEQ5	Not Available	521
ACOD_FV90NF401DY7DU	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	502
ACOD_FV90NF401E2EUG	All Organisms → cellular organisms → Bacteria	530

Sequences

Scaffold ID	Protein ID	Family	Sequence
ACOD_contig00546	ACODT_19273620	F071942	MSKTSKPGEFRTPDLYYAAYLQTAGVGLLRTDREGSRVYFIFDTSLGNMEELKQAWINNTGKVAAQPYAFSIRSLKAICHMP
ACOD_F95O9CU01A2E6E	ACODT_4283730	F000150	RVEHDLSAGFCMSITTYLDDFDADLETKTVLRVALERTRVSLGLDKFANGIIARRIVELAKAGERNPDLLCEGAIEKLSGHLYGD
ACOD_F95O9CU02FK5Z3	ACODT_10433390	F006745	MADGVAPHRRRPTSSAVLVYVIVLVALQLFLVTVAAEAFLSDDEGLAWATAAISVAMFGAAATFLRYLRP
ACOD_F95O9CU02GV1XT	ACODT_13649140	F002255	MKRLLLGLALAAAVAYALRDWFAAPQPHPSWEETDNDPEDMSLDLAQRAREAEGAQAAEESETPAT
ACOD_FV90NF401A9DY4	ACODT_14959570	F091073	MDQALVIEREREDWTRLYHKMLKGLETMIDVQRMAKNIKKLAEEANTILTEVEGTILMASINN*TMNATSLTQISEDLRYLVQSDMDKRAFQIQRMLADKLDQYKGKDNKYVEDNIKEIQELYTNEEINQAQGTIENKEVILVRLY
ACOD_FV90NF401AZYHW	ACODT_7924670	F055231	LGALAATPAFANWWIVRSSDETCLVVDIEPTGKEKGITKIGKDSYPTAEQAEADVKRLCQSEAKPKRNP
ACOD_FV90NF401B4SIR	ACODT_3610280	F000198	LGFLKAHGYLDVSDPSQPASFAEPDLRLANRGGARISAAEIAAILERRRPIERALRVIGPHASLTAAANSVPWLPLRQLFEAFADIRGVGFAKMTKALHPQRPALIPMLDSVVRKYLKEDDPGAQAPFGERAIALVRGYKRDLDRNAVAVGAVRQELARRSYVLTEVRIL
ACOD_FV90NF401C6Z53	ACODT_10400310	F019500	EPEYIHWNVNASPVNFETATFTVNSITVQEQLGAYEPLNRTNEFTVKFGVHF
ACOD_FV90NF401C7I92	ACODT_18249320	F097652	MWKYTTRTVEEGPFAWNDLMVRYRMPRGISVQEMAPCEFEEIRFYAYTDELGATNLPPNPNQDTDFWPAPSAGLRFFRGGYEHIVDDETKACLISSGVADESNFEATSGFG
ACOD_FV90NF401CAEQ5	ACODT_11352920	F023771	DPALEIVIPDGQQFHAELSEEKPIPAAGTVATRQGRRSAALVEQMSAVRKQTQQLLQRNQQLRHELSTVCLVSESIRVRASRLVSLARLAGSPADDVYRIANKPPRRSPPHLVVLPGG
ACOD_FV90NF401DY7DU	ACODT_9091130	F073159	MAARKKGAVRPGQGVMCNICGLNCGKGGALKKHVEGAHSVDYDAYKKCFYGTVKTILADSWDDTVSTSNGDTVVVHVLVRRFIQDPGPRGATRAVRKQSA
ACOD_FV90NF401E2EUG	ACODT_10644900	F032964	DAMQMAGMDVKISYNWNMKRIDLISEDVWGRGEILPLGFYTTDGRKIFEIRGASGGVATSDIFYMVLGTQTFVNNPRLVLILTILRFRRGYLG