2035918001: Activated sludge microbial communities from Commune de Morges, Switzerland - plasmid pool Visp-2009 (Newbler)

Overview

Basic Information

• IMG/M Taxon OID: 2035918001
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0056623 | Gp0051590 | Ga0026335
• Sample Name: Activated sludge microbial communities from Commune de Morges, Switzerland - plasmid pool Visp-2009 (Newbler)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 12200307
• Sequencing Scaffolds: 6
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Activated Sludge Microbial Communities From Commune De Morges, Switzerland
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Aerobic) → Activated Sludge → Wastewater Plasmid Pools → Activated Sludge Microbial Communities From Commune De Morges, Switzerland

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Visp, Switzerland
• Coordinates
  • Lat. (^o): 46.30044
  • Long. (^o): 7.8594
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003381	Metagenome	490	Y
F012842	Metagenome	277	Y
F053675	Metagenome	141	Y
F070808	Metagenome	122	Y
F079394	Metagenome	116	Y
F081940	Metagenome	114	Y
F084903	Metagenome	112	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
WWPM1086_GHCZ1763_g1	Not Available	693
WWPM1086_GHCZ2246_b1	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	799
WWPM1086_GHCZ4414_g1	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus	726
WWPM1086_GHCZ5933_g1	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	729
WWPM1086_GHCZ6091_g1	Not Available	700
WWPM1086_GHCZ7500_g1	Not Available	700

Sequences

Scaffold ID	Protein ID	Family	Sequence
WWPM1086_GHCZ1763_g1	WWPMV_391800	F053675	MWDLKPFHIYTLCSHEKSYVFSMWDLKPISIYTLCFQGKSYVFSMWDKKLF
WWPM1086_GHCZ2246_b1	WWPMV_321440	F012842	MIVHGCIEIHLKDCGGWIIVMGFRVLLISQHLFPEILLEAVLGIHAGSVKIKSICIQML
WWPM1086_GHCZ4414_g1	WWPMV_472090	F070808	TFKAPYFEYLVRSSAQHFTDLIVVAERIEQAIGLGKIANPIEKNGFNEKGKETEGGCQGTYCSYS
WWPM1086_GHCZ5933_g1	WWPMV_180280	F003381	VDQPINISKDPLHVPNGPITRSKSKTLKEALNALVLKVSTKSDLKGPLEYQEEALVHLIHLQEGPNPTLFGP
WWPM1086_GHCZ6091_g1	WWPMV_540390	F084903	MNIQNIIGNNLLLFAVNIWIKKPQVVNIQNTFLGIISHDYLFNHKSLKKAFIIIGDISNYKTNQT
WWPM1086_GHCZ7440_b1	WWPMV_09040	F079394	VELLSVLKTKPRGRVELVQDENKDTSVRDEFFQVSELVEPYRVAHSIDLEENSNFRVFNDSLVDVEADE
WWPM1086_GHCZ7500_g1	WWPMV_30620	F081940	LIEIRGQIAKKLKFWGQLGFKLIKFAAKDQYAKGAKL