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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2032320003 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0059646 | Gp0051364 | Ga0026401 |
| Sample Name | Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2- |
| Sequencing Status | Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 123178563 |
| Sequencing Scaffolds | 31 |
| Novel Protein Genes | 32 |
| Associated Families | 29 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium | 9 |
| Not Available | 8 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → environmental samples → uncultured Chloroflexia bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae | 5 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 3 |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → environmental samples → uncultured Ramlibacter sp. | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium | 2 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Soil Microbial Communities From Face And Otc Sites In Usa |
| Type | Environmental |
| Taxonomy | Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Face And Otc Sites In Usa |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | desert biome → research facility → soil |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Nevada Desert Research Center | |||||||
| Coordinates | Lat. (o) | 36.76667 | Long. (o) | -115.95 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000680 | Metagenome / Metatranscriptome | 939 | Y |
| F000756 | Metagenome / Metatranscriptome | 905 | Y |
| F001042 | Metagenome / Metatranscriptome | 794 | Y |
| F004218 | Metagenome / Metatranscriptome | 448 | Y |
| F007637 | Metagenome / Metatranscriptome | 347 | Y |
| F008774 | Metagenome / Metatranscriptome | 328 | Y |
| F009290 | Metagenome / Metatranscriptome | 320 | Y |
| F010524 | Metagenome / Metatranscriptome | 302 | Y |
| F010813 | Metagenome / Metatranscriptome | 298 | Y |
| F013227 | Metagenome | 273 | Y |
| F015186 | Metagenome / Metatranscriptome | 256 | Y |
| F015700 | Metagenome / Metatranscriptome | 252 | Y |
| F016251 | Metagenome / Metatranscriptome | 248 | Y |
| F017620 | Metagenome / Metatranscriptome | 239 | Y |
| F017904 | Metagenome / Metatranscriptome | 238 | Y |
| F019791 | Metagenome / Metatranscriptome | 227 | Y |
| F025186 | Metagenome / Metatranscriptome | 203 | Y |
| F034817 | Metagenome | 173 | Y |
| F035956 | Metagenome | 171 | Y |
| F037082 | Metagenome | 168 | Y |
| F037922 | Metagenome / Metatranscriptome | 167 | Y |
| F040839 | Metagenome | 161 | Y |
| F049418 | Metagenome | 146 | Y |
| F062498 | Metagenome | 130 | Y |
| F070946 | Metagenome / Metatranscriptome | 122 | Y |
| F075779 | Metagenome / Metatranscriptome | 118 | Y |
| F079677 | Metagenome / Metatranscriptome | 115 | Y |
| F087716 | Metagenome / Metatranscriptome | 110 | Y |
| F089981 | Metagenome | 108 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| FACENCT_FZOFKYN02F0DQ1 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium | 502 | Open in IMG/M |
| FACENCT_FZOFKYN02FFJ4C | Not Available | 529 | Open in IMG/M |
| FACENCT_FZOFKYN02FHW07 | Not Available | 517 | Open in IMG/M |
| FACENCT_FZOFKYN02FP912 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → environmental samples → uncultured Chloroflexia bacterium | 543 | Open in IMG/M |
| FACENCT_FZOFKYN02FZGW9 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium | 560 | Open in IMG/M |
| FACENCT_FZOFKYN02G396F | Not Available | 523 | Open in IMG/M |
| FACENCT_FZOFKYN02G5M4N | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium | 549 | Open in IMG/M |
| FACENCT_FZOFKYN02G5R4O | Not Available | 524 | Open in IMG/M |
| FACENCT_FZOFKYN02GA3LX | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium | 519 | Open in IMG/M |
| FACENCT_FZOFKYN02GKPT3 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae | 556 | Open in IMG/M |
| FACENCT_FZOFKYN02GPINK | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae | 541 | Open in IMG/M |
| FACENCT_FZOFKYN02GQCQP | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 516 | Open in IMG/M |
| FACENCT_FZOFKYN02GQIEP | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium | 519 | Open in IMG/M |
| FACENCT_FZOFKYN02GSJER | Not Available | 515 | Open in IMG/M |
| FACENCT_FZOFKYN02GZTF2 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. | 514 | Open in IMG/M |
| FACENCT_FZOFKYN02H4JWR | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → environmental samples → uncultured Ramlibacter sp. | 517 | Open in IMG/M |
| FACENCT_FZOFKYN02HB1DF | Not Available | 524 | Open in IMG/M |
| FACENCT_FZOFKYN02HC2XA | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium | 524 | Open in IMG/M |
| FACENCT_FZOFKYN02HKDC6 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Ramlibacter → environmental samples → uncultured Ramlibacter sp. | 533 | Open in IMG/M |
| FACENCT_FZOFKYN02HO0WT | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium | 532 | Open in IMG/M |
| FACENCT_FZOFKYN02HUIB8 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae | 520 | Open in IMG/M |
| FACENCT_FZOFKYN02HW51S | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 551 | Open in IMG/M |
| FACENCT_FZOFKYN02HZQ3Z | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium | 541 | Open in IMG/M |
| FACENCT_FZOFKYN02I0VVV | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae | 511 | Open in IMG/M |
| FACENCT_FZOFKYN02I7ZXL | Not Available | 541 | Open in IMG/M |
| FACENCT_FZOFKYN02I842Z | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 534 | Open in IMG/M |
| FACENCT_FZOFKYN02IJL2L | Not Available | 513 | Open in IMG/M |
| FACENCT_FZOFKYN02IKTLE | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium | 537 | Open in IMG/M |
| FACENCT_FZOFKYN02IPGNO | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium | 529 | Open in IMG/M |
| FACENCT_FZOFKYN02ITODE | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium | 538 | Open in IMG/M |
| FACENCT_FZOFKYN02JPOXW | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae | 542 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| FACENCT_FZOFKYN02F0DQ1 | FACENCTA_1828900 | F008774 | GARGADGMTDEEIYRFALVLKECERIRAMMARDEAALSSGERDGIPIAARPPDQRPPLPTRATAA |
| FACENCT_FZOFKYN02FFJ4C | FACENCTA_2114370 | F037082 | MRSPFGQALRVLQVAALLLVFAVIINLAVYGWLAVILEAAALFLALAIAVNLAVYGWLGALGAWWSATEAHDAGDRLVHLLIAVSFTAMAAGAWYALAFVVSPLFG |
| FACENCT_FZOFKYN02FHW07 | FACENCTA_3526290 | F010524 | VATTTNNARELAQKVREALWAEWQGAAGGSLQSAVVYRRLLDEGVEVPGYQMSAILNSFKVGGLITVSHRPQREDDVREHGDLVIMGVRSDLCHSS |
| FACENCT_FZOFKYN02FP912 | FACENCTA_3433080 | F004218 | MCPSSLLARAKKAAYDNGAALLGDERSGRFSHDMAEGEYRMLGQTVVVTATEKHWLLPWPVVEAQLRDLIR |
| FACENCT_FZOFKYN02FZGW9 | FACENCTA_4358550 | F015700 | RMSLCTDGFQRRTSIKTQAKSDGLRLLRAIDSTQAHGLEGTKVDPNRAAHEAGLDVGDVGSDRYHHALGYLLEEGALVGDEHTATQTGDRQAHGYALYFFTRRAIKLLEG |
| FACENCT_FZOFKYN02G396F | FACENCTA_4863090 | F035956 | GDPDPPRRVGLVRSAFLRMLRMAGLAEQPVEAKPLEREETPVRESCDCGGEEEFEYRLPVLDDGEWVLRCPECGHADRLRWLSEEARPLVLAVAQRRRRLRLRREVRS |
| FACENCT_FZOFKYN02G5M4N | FACENCTA_2201380 | F000756 | MMDRERPGASGPEDRIPEAWIGQEVMIETTEVLSSDLRAGAPVYLEDVNERGIVMMVTRHRDQSRFSRYFYPWGVVGWIRLAEDDERAEP |
| FACENCT_FZOFKYN02G5R4O | FACENCTA_5888420 | F087716 | LLARERPGWRVAEVLEVNDESGPTFEVVVESGDERRTVLVSADERFVGEWR |
| FACENCT_FZOFKYN02GA3LX | FACENCTA_3245140 | F010813 | GDNSSQCANIQGVANTGNAQNQLDLIQYGSEADDFEFEEVGSTITVSPNEDVDEVYSCTTQVNQAASASG |
| FACENCT_FZOFKYN02GKPT3 | FACENCTA_3760280 | F062498 | TEALASADRELAEYVRRVRLDNAEAILEAKNERTASLYLDGLLDTEEHRRLDTARTRTELDQGHARREVERLHLIVRLLGTQTTEGK |
| FACENCT_FZOFKYN02GPINK | FACENCTA_3023160 | F079677 | YERLDDGSREGHARLRMAWQLTWGPEDGASTVLPGDGGIHRVTNLGDEVALSVHLYGPRTGEVDGRDYDPSRDQVCDRRDRDMDQEYPQVKG |
| FACENCT_FZOFKYN02GQCQP | FACENCTA_4900060 | F025186 | ALSGLNARTYGAPGLEEDIRFCAREDVLDVVPRLARVEGGAAEIVA |
| FACENCT_FZOFKYN02GQIEP | FACENCTA_5465810 | F015700 | KSDGLRLLRAIDATQAHGLEGTKVDPARAAHDAGLDVGDVGSDRYHRAMGYLLEEGALAGDEHTATQTGDRQAHGYALYFFTRRAVRLLEG |
| FACENCT_FZOFKYN02GSJER | FACENCTA_3114120 | F019791 | EQAVRMLAGHPDSATFVGEYAELRRSGAPIERALVSVGHEERLREHEHAPVRLAWRERPRRSRPSAGGYELLMAVRLRDESRDRRRGAALWPRSDTKFPVRRHRGDT |
| FACENCT_FZOFKYN02GZTF2 | FACENCTA_3182640 | F001042 | LRGISHRIFLKDSQAEADDKIVIDKLLVNKLTELLINSIYNVHVSRRSEIFLTSLDMHLADFSISNKNDIVCREFTEKSSLLLESYQKDVPKSLGKAESCLGEAIDLINLIVSASEAEVNNG |
| FACENCT_FZOFKYN02H4JWR | FACENCTA_5555940 | F009290 | MCGKNIVASTHNLQSWRYTVEATAKNIDKTARTAREMAEAQRDSFEALAENFAAAQRRSMGLAEGGLKFVKLQEDNARAAQEFFANGVRLLQLQGRNAEFVQGWTEDAVEVMREQTEHNARTAEAFARAIGRQQESFRTLSRGWVGAYTEFFSPF |
| FACENCT_FZOFKYN02HB1DF | FACENCTA_3329050 | F015186 | LADPAPEATLSVAEAARLLGVPEPNVRELADGEGRVPLEAVRDRVGGTAAALDLAHELANALAQAREEVGRLSGSLKEVRASNARLQREAKEATAERRRLTDEVLELRAAAEERLMLMERIEHISRVEQDLEESASELDR |
| FACENCT_FZOFKYN02HC2XA | FACENCTA_3983910 | F070946 | MDDQQRQRMNRAAQEFTEALVAAYRTASDNTAVAQQLGAQQIEYFFDAVVGNLRAQAGGTSQMARQLASQQRLAQEATRDLAQLSTDNYMDLLDSVFSF |
| FACENCT_FZOFKYN02HKDC6 | FACENCTA_2841080 | F009290 | KNIDKTARTAYEMAEAQRDSSRLWPRTSPQPSAGAVGLAEGGLEFVKLQEDNARAAQEFFANGVRLLQLQGRNAEFVQGWTEDAVEVMREQAEHNARTAEAFTRAISRQQEGLRTLTQGWVGAYTDFFSPFAYARQGMRAFQQATRQGLEVTEQVARQGLRAAEETTRQ |
| FACENCT_FZOFKYN02HO0WT | FACENCTA_5280230 | F007637 | MLRAIHERGGRWDRVDPDTEVAGIGGEIGLGEDASYELFGQLVDKGYVDPSRVLGAGGAMPGHTSRVVGREHNMTVIGDEVRLTDKGLTEIG |
| FACENCT_FZOFKYN02HUIB8 | FACENCTA_4350070 | F017904 | VLLGIKYEAARIGGVGEADLATIEEQITREVGEDWRADEQIIRGRNAVRREHGLTGLGEPGDRPSPPAEVRRPLWRRVLGR |
| FACENCT_FZOFKYN02HW51S | FACENCTA_4276330 | F037922 | MRNLPKIETVEQAREVLLGMGEEQEITAELDEWKASIKKHNDQEYNVSFVDLETGIISLMDASHILLEHGNHDLYLG |
| FACENCT_FZOFKYN02HZQ3Z | FACENCTA_722230 | F013227 | IRLDSKTIEPRHRYRIKAAWVSYATIQVIWVLCIFLTPVAVNLHPSKLWAVPFCCVTVANGMHMIFFRYEYNAVLRRAVRLVPYARFITPSQNDPKYFLPFGMAYAMLGVVSAILVVAA |
| FACENCT_FZOFKYN02I0VVV | FACENCTA_1495330 | F016251 | ALARILEQEGEEGRTVWASFDWVKQVDLQTALGQQKRLAELVGTRQLVVKTAALEEAIGEWTPSNLRRIHPAHATLILASEGGLSLSRATPMPPS |
| FACENCT_FZOFKYN02I7ZXL | FACENCTA_1778890 | F034817 | LKVLRSSEQIILTCEDCGEKLVVFGTEENWRSRQAVFVCGYGHKLTLDGRADEEVLAAS |
| FACENCT_FZOFKYN02I842Z | FACENCTA_3768140 | F089981 | TVCHTDDVAIETRYRVRRVVSRGTPGYQLGHYEMTGKPGARRSVFKVLVHLGEHQTPEAALAAWREDVGRTRSVGRDKTAARIGKKIRKLEGALSSETT |
| FACENCT_FZOFKYN02IJ0G8 | FACENCTA_2066760 | F040839 | MASRTSSGGDYDLSDPVGGFVDVVRRVAFQPRAFFAGLPRQGGLLGPLVFALVCIEVSVLLVGLL |
| FACENCT_FZOFKYN02IJL2L | FACENCTA_114010 | F015186 | VRLLGVPEPEARALADEEGRVLLGTVRDRLGGTASLERALSLVETLATELAGVREEVGRLSGQLGEVRASNARLQREAKDSTAERRKLTDEVLELRAAAEERLMLMERVEHIARVEQDLEESTSELDRLRSRRLLDRLLNR |
| FACENCT_FZOFKYN02IKTLE | FACENCTA_724570 | F075779 | MDRERPAAPKGAPIPEAWIGQEVMLETTETLSSDLRAAAPVYLEDV |
| FACENCT_FZOFKYN02IPGNO | FACENCTA_5372430 | F000680 | MDVSSIEGHDLYQNKTTNTRRDGMRKLIMLTAVLAMLAVAAVPAIAQIGQEGEQESESGDVDQSFTVTSEGDNSNQCAGIQGVANTGNAQNQTSLIQYGSEADDFEFDEVGSNVEVSPSN |
| FACENCT_FZOFKYN02ITODE | FACENCTA_5614500 | F017620 | VDPSRAAHETGLDIGDVGSDRYHHALGYLLEEAALVGDEHTAFDVGDEHPHGYALYFFTQRALN |
| FACENCT_FZOFKYN02JPOXW | FACENCTA_5199780 | F049418 | MGMMVLGLLLASALALALTLFAPVSERGVSPRPAEARTPALTVTVACEATPERTRVKNNRNRAITIKAVGSIYRPYSYEPIRVDRRLGAGNTVTFESGSGPTATSSRGSHIYNNDVGGKEGRRSSRRAERGFTDRCG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |