Basic Information | |
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IMG/M Taxon OID | 2032320002 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0059646 | Gp0051360 | Ga0026225 |
Sample Name | Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+ |
Sequencing Status | Draft |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 202685464 |
Sequencing Scaffolds | 22 |
Novel Protein Genes | 26 |
Associated Families | 24 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae | 5 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium | 2 |
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. | 1 |
All Organisms → cellular organisms → Bacteria | 3 |
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium | 1 |
Not Available | 4 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans | 1 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes | 1 |
Ecosystem Assignment (GOLD) | |
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Name | Soil Microbial Communities From Face And Otc Sites In Usa |
Type | Environmental |
Taxonomy | Environmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Face And Otc Sites In Usa |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | desert biome → research facility → soil |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) |
Location Information | ||||||||
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Location | FACE Site 3 Nevada Test Site Creosote | |||||||
Coordinates | Lat. (o) | 36.766667 | Long. (o) | -115.95 | Alt. (m) | N/A | Depth (m) | .05 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000733 | Metagenome / Metatranscriptome | 916 | Y |
F000756 | Metagenome / Metatranscriptome | 905 | Y |
F003179 | Metagenome | 503 | Y |
F007637 | Metagenome / Metatranscriptome | 347 | Y |
F014544 | Metagenome / Metatranscriptome | 262 | Y |
F018678 | Metagenome / Metatranscriptome | 233 | Y |
F022748 | Metagenome / Metatranscriptome | 213 | Y |
F024965 | Metagenome | 203 | Y |
F025512 | Metagenome / Metatranscriptome | 201 | Y |
F026118 | Metagenome | 199 | Y |
F030774 | Metagenome / Metatranscriptome | 184 | Y |
F032480 | Metagenome | 180 | Y |
F035902 | Metagenome / Metatranscriptome | 171 | Y |
F044333 | Metagenome / Metatranscriptome | 154 | Y |
F047038 | Metagenome / Metatranscriptome | 150 | Y |
F056389 | Metagenome | 137 | Y |
F062389 | Metagenome / Metatranscriptome | 130 | N |
F064773 | Metagenome / Metatranscriptome | 128 | Y |
F069695 | Metagenome | 123 | Y |
F072732 | Metagenome | 121 | Y |
F073081 | Metagenome | 120 | Y |
F077156 | Metagenome / Metatranscriptome | 117 | Y |
F085140 | Metagenome / Metatranscriptome | 111 | Y |
F095940 | Metagenome / Metatranscriptome | 105 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
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FACENCE_FW6223E01A7MY8 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae | 568 | Open in IMG/M |
FACENCE_FW6223E01AI6GH | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium | 521 | Open in IMG/M |
FACENCE_FW6223E01AJ6AG | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp. | 505 | Open in IMG/M |
FACENCE_FW6223E01AKH0B | All Organisms → cellular organisms → Bacteria | 520 | Open in IMG/M |
FACENCE_FW6223E01AOLZG | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium | 550 | Open in IMG/M |
FACENCE_FW6223E01AZJ7D | Not Available | 507 | Open in IMG/M |
FACENCE_FW6223E01B0800 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae | 503 | Open in IMG/M |
FACENCE_FW6223E01BCODH | All Organisms → cellular organisms → Bacteria | 529 | Open in IMG/M |
FACENCE_FW6223E01BJZ0J | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 558 | Open in IMG/M |
FACENCE_FW6223E01BL251 | Not Available | 581 | Open in IMG/M |
FACENCE_FW6223E01CASRN | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae | 500 | Open in IMG/M |
FACENCE_FW6223E01CPFKD | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium | 528 | Open in IMG/M |
FACENCE_FW6223E01D1G91 | All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium | 510 | Open in IMG/M |
FACENCE_FW6223E01D1Y12 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae | 509 | Open in IMG/M |
FACENCE_FW6223E01D95FJ | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans | 524 | Open in IMG/M |
FACENCE_FW6223E01DAD5L | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter | 511 | Open in IMG/M |
FACENCE_FW6223E01DN4AL | All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes | 530 | Open in IMG/M |
FACENCE_FW6223E01EFHDL | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium | 533 | Open in IMG/M |
FACENCE_FW6223E01EIO8T | Not Available | 518 | Open in IMG/M |
FACENCE_FW6223E01EJP9V | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae | 533 | Open in IMG/M |
FACENCE_FW6223E01ERQQV | All Organisms → cellular organisms → Bacteria | 513 | Open in IMG/M |
FACENCE_FW6223E01EVB99 | Not Available | 525 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
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FACENCE_FW6223E01A7MY8 | FACENCEE_4453540 | F000756 | MMDRERPGASDSDDRIPEAWIGQEVMIETTEVLSSDLRAGAPVYLEDVNERGVVMLVTRHRDHDKSSRYFYPWGVIGWIRLAEDNERAEP |
FACENCE_FW6223E01A9MDC | FACENCEE_7357930 | F073081 | MMWGLSKNEKRRSRAEALYELETGLREEGWPSEELVHDAEHDLYRFSDGEFAFSREYANEGGYMRSALWGSLS |
FACENCE_FW6223E01AI6GH | FACENCEE_05780 | F003179 | LIEEGALVGDEHTAFDVGDRHPHGYALYFFTRRALTLLEG |
FACENCE_FW6223E01AJ6AG | FACENCEE_3955780 | F062389 | MHLAEYSISNKNDTACREFTEKSSLLLESYQEDVPKSLGKAESCLGEAIDLINLIVSASVAEANNG |
FACENCE_FW6223E01AKH0B | FACENCEE_236950 | F085140 | APVYALRNYLQDSTGAKRGDVQIVLDTGSTVEPNAADAQEFVDVARNVLEISNRATGQAGAS |
FACENCE_FW6223E01AOLZG | FACENCEE_5578680 | F030774 | MMSNTPQAETLRKAIENLIDAKLHDVLAKPGGLDRLAAHRRTGVASYDIRNAERRLEQTLAEILAGSESLS |
FACENCE_FW6223E01AZJ7D | FACENCEE_6430530 | F047038 | MEYTMQTVMILGTHVSGIDVSLDRRGWQRKRTCSVALDAFPTVNGIGVSAQGRPC |
FACENCE_FW6223E01B0800 | FACENCEE_7106360 | F024965 | SLAGKRIDSLSDHTVQMVREAHLNGELELNAVVDDVAVRAATVLAEKGYWMWLFQAATEDLTTWQDLHGDYWIVDPNNGSIWEWDK |
FACENCE_FW6223E01BCODH | FACENCEE_8655870 | F064773 | VGLSNGAEIYAIAVGGGKVATRRIGPTHGEDCASLALSPRGTLYSMCGPLFGDQRLATIDRQTGRADLFGVPVPGLAVMAMAFGPDGTLYAVGDCNPDPATFECVPGSDPDYNSLYRVDERTGAFTRIGATGAPQLFMDLTFDRRGNLLG |
FACENCE_FW6223E01BJZ0J | FACENCEE_6479900 | F035902 | SATRATLDRLGAEAERTGEGPVLHGDPNQGEAHVVHGAHVESARLNLEWARALGVG |
FACENCE_FW6223E01BL251 | FACENCEE_5006130 | F077156 | VTAPDTDPAYAQGDQDAEPTMTXPPGQRPDAASTSDAPDASDEYADKPDAEGAS |
FACENCE_FW6223E01CASRN | FACENCEE_557950 | F044333 | MMDRERPSASDSAGTIPEAWIGQQVMLETTETLSTDLRATAPVHLEDVNDRGVVVLVISQHDQSHSSLYFYP |
FACENCE_FW6223E01CPFKD | FACENCEE_9853920 | F026118 | KEARAAYHLGIAEELFEEISKEASATSGFPRVRGIEAWMHDEMDFGEHFHALRNQLARRVLQRDYPEGWGTRPEPIQDARLD |
FACENCE_FW6223E01D13XA | FACENCEE_8102750 | F056389 | VQIVVAAQSVEGLGNQRQAPRLLSSCAGGVIVHQCPDPERLLAMGGTVRVLEHNWELDAYGPRGIAKTRLTERSRVDPEQVRNADQGEAWVIQAGRAVHMQVLPPPAPAEPAAELAGQLPAGEQGDTAPLPRVVPPGRIAAAVALTVAVARRVRR |
FACENCE_FW6223E01D1G91 | FACENCEE_9499580 | F095940 | RDAPCAAPTGSHPTETFVEACHLASLKTWRDSSLTADPLNPEGR |
FACENCE_FW6223E01D1Y12 | FACENCEE_8413100 | F072732 | PYGLYADVGRVASFAEGRTGYREWALRSGRLGDIHALDDRYDHDTDELMG |
FACENCE_FW6223E01D826H | FACENCEE_476820 | F022748 | LKKLLRGLVLLGALAGAAYAARSYMQGEPAGQDAVQLVFDDGSMHSLASNTVQGQEFTDIARKVVEIGV |
FACENCE_FW6223E01D95FJ | FACENCEE_6465980 | F018678 | MRPEEDPLGGREDVLGRLIEEKAGEGRTVWASFNWVVPVELETALEQQERLSELVGSGQQLVVKTAALEEAIDEWSSATLRRAQSSHSGTIMASDNGLSLNRTTPM |
FACENCE_FW6223E01DAD5L | FACENCEE_8530800 | F003179 | RYHHALGYLLKEAALLEDEHMAFDVGGQHPHSYTLYFFTRRAVKLLEG |
FACENCE_FW6223E01DN4AL | FACENCEE_6821570 | F000733 | PMRHPTVQVPDIGPMDHAWDVLGEWQAEFELPESESPVHGKVMFRSWGDAELQLDPVEAAIAGIPSSVPLERASEVHLTDAGGGALQWVLHAPSTNWSLQATLWPGSLHLFVHDPEDEEEHLYRARATRNREYYLRKYP |
FACENCE_FW6223E01EFHDL | FACENCEE_1282310 | F007637 | VDPDTEVAGMGDEISLTADASYELFGQLVDEGYVDPGRVLGTGGAMPGHTSRIVGREHNMTVVGDEVRLTDKGLAEIG |
FACENCE_FW6223E01EIO8T | FACENCEE_7082380 | F025512 | LDRTVRLLEGAIEAPALSLGPATRLVDDHIHRNEVARRSHVKTWRARHKRVKILPL |
FACENCE_FW6223E01EJP9V | FACENCEE_4767280 | F069695 | ALIVVQIALLAATIGAFAFMLSSLWATLRLTFVGMPESAPEETEAEESSDVRS |
FACENCE_FW6223E01EMSFZ | FACENCEE_3506940 | F073081 | RGAEALYELETAFREDGWPSEDFVYDAEHDLYRFPDGGFAFSKEYANERRLREMGIIG |
FACENCE_FW6223E01ERQQV | FACENCEE_379310 | F014544 | MPETTVTRRTVLATSAFGAAALALPFVREARAAAGGVEPKGRMTLAWHTNIASRWLDPQQHDGTAS |
FACENCE_FW6223E01EVB99 | FACENCEE_7707630 | F032480 | IRQRTLGKDNAMDEGHAPMAEYTALIEQLFTKRSTLVQAMVANPEQITDEQIRDLAWLQSAFAAVEAEHRRAERDTLHKEVQQRTGALPSLP |
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