NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2032320002

2032320002: Soil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+



Overview

Basic Information
IMG/M Taxon OID2032320002 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0059646 | Gp0051360 | Ga0026225
Sample NameSoil microbial communities from sample at FACE Site 3 Nevada Test Site Creosote CO2+
Sequencing StatusDraft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size202685464
Sequencing Scaffolds22
Novel Protein Genes26
Associated Families24

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.1
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium1
Not Available4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSoil Microbial Communities From Face And Otc Sites In Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Sand → Desert → Soil → Soil Microbial Communities From Face And Otc Sites In Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)desert biomeresearch facilitysoil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationFACE Site 3 Nevada Test Site Creosote
CoordinatesLat. (o)36.766667Long. (o)-115.95Alt. (m)N/ADepth (m).05
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000733Metagenome / Metatranscriptome916Y
F000756Metagenome / Metatranscriptome905Y
F003179Metagenome503Y
F007637Metagenome / Metatranscriptome347Y
F014544Metagenome / Metatranscriptome262Y
F018678Metagenome / Metatranscriptome233Y
F022748Metagenome / Metatranscriptome213Y
F024965Metagenome203Y
F025512Metagenome / Metatranscriptome201Y
F026118Metagenome199Y
F030774Metagenome / Metatranscriptome184Y
F032480Metagenome180Y
F035902Metagenome / Metatranscriptome171Y
F044333Metagenome / Metatranscriptome154Y
F047038Metagenome / Metatranscriptome150Y
F056389Metagenome137Y
F062389Metagenome / Metatranscriptome130N
F064773Metagenome / Metatranscriptome128Y
F069695Metagenome123Y
F072732Metagenome121Y
F073081Metagenome120Y
F077156Metagenome / Metatranscriptome117Y
F085140Metagenome / Metatranscriptome111Y
F095940Metagenome / Metatranscriptome105Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
FACENCE_FW6223E01A7MY8All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae568Open in IMG/M
FACENCE_FW6223E01AI6GHAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium521Open in IMG/M
FACENCE_FW6223E01AJ6AGAll Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → unclassified Nitrososphaera → Nitrososphaera sp.505Open in IMG/M
FACENCE_FW6223E01AKH0BAll Organisms → cellular organisms → Bacteria520Open in IMG/M
FACENCE_FW6223E01AOLZGAll Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium550Open in IMG/M
FACENCE_FW6223E01AZJ7DNot Available507Open in IMG/M
FACENCE_FW6223E01B0800All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae503Open in IMG/M
FACENCE_FW6223E01BCODHAll Organisms → cellular organisms → Bacteria529Open in IMG/M
FACENCE_FW6223E01BJZ0JAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium558Open in IMG/M
FACENCE_FW6223E01BL251Not Available581Open in IMG/M
FACENCE_FW6223E01CASRNAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae500Open in IMG/M
FACENCE_FW6223E01CPFKDAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium528Open in IMG/M
FACENCE_FW6223E01D1G91All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium510Open in IMG/M
FACENCE_FW6223E01D1Y12All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae509Open in IMG/M
FACENCE_FW6223E01D95FJAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans524Open in IMG/M
FACENCE_FW6223E01DAD5LAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter511Open in IMG/M
FACENCE_FW6223E01DN4ALAll Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes530Open in IMG/M
FACENCE_FW6223E01EFHDLAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium533Open in IMG/M
FACENCE_FW6223E01EIO8TNot Available518Open in IMG/M
FACENCE_FW6223E01EJP9VAll Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae533Open in IMG/M
FACENCE_FW6223E01ERQQVAll Organisms → cellular organisms → Bacteria513Open in IMG/M
FACENCE_FW6223E01EVB99Not Available525Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
FACENCE_FW6223E01A7MY8FACENCEE_4453540F000756MMDRERPGASDSDDRIPEAWIGQEVMIETTEVLSSDLRAGAPVYLEDVNERGVVMLVTRHRDHDKSSRYFYPWGVIGWIRLAEDNERAEP
FACENCE_FW6223E01A9MDCFACENCEE_7357930F073081MMWGLSKNEKRRSRAEALYELETGLREEGWPSEELVHDAEHDLYRFSDGEFAFSREYANEGGYMRSALWGSLS
FACENCE_FW6223E01AI6GHFACENCEE_05780F003179LIEEGALVGDEHTAFDVGDRHPHGYALYFFTRRALTLLEG
FACENCE_FW6223E01AJ6AGFACENCEE_3955780F062389MHLAEYSISNKNDTACREFTEKSSLLLESYQEDVPKSLGKAESCLGEAIDLINLIVSASVAEANNG
FACENCE_FW6223E01AKH0BFACENCEE_236950F085140APVYALRNYLQDSTGAKRGDVQIVLDTGSTVEPNAADAQEFVDVARNVLEISNRATGQAGAS
FACENCE_FW6223E01AOLZGFACENCEE_5578680F030774MMSNTPQAETLRKAIENLIDAKLHDVLAKPGGLDRLAAHRRTGVASYDIRNAERRLEQTLAEILAGSESLS
FACENCE_FW6223E01AZJ7DFACENCEE_6430530F047038MEYTMQTVMILGTHVSGIDVSLDRRGWQRKRTCSVALDAFPTVNGIGVSAQGRPC
FACENCE_FW6223E01B0800FACENCEE_7106360F024965SLAGKRIDSLSDHTVQMVREAHLNGELELNAVVDDVAVRAATVLAEKGYWMWLFQAATEDLTTWQDLHGDYWIVDPNNGSIWEWDK
FACENCE_FW6223E01BCODHFACENCEE_8655870F064773VGLSNGAEIYAIAVGGGKVATRRIGPTHGEDCASLALSPRGTLYSMCGPLFGDQRLATIDRQTGRADLFGVPVPGLAVMAMAFGPDGTLYAVGDCNPDPATFECVPGSDPDYNSLYRVDERTGAFTRIGATGAPQLFMDLTFDRRGNLLG
FACENCE_FW6223E01BJZ0JFACENCEE_6479900F035902SATRATLDRLGAEAERTGEGPVLHGDPNQGEAHVVHGAHVESARLNLEWARALGVG
FACENCE_FW6223E01BL251FACENCEE_5006130F077156VTAPDTDPAYAQGDQDAEPTMTXPPGQRPDAASTSDAPDASDEYADKPDAEGAS
FACENCE_FW6223E01CASRNFACENCEE_557950F044333MMDRERPSASDSAGTIPEAWIGQQVMLETTETLSTDLRATAPVHLEDVNDRGVVVLVISQHDQSHSSLYFYP
FACENCE_FW6223E01CPFKDFACENCEE_9853920F026118KEARAAYHLGIAEELFEEISKEASATSGFPRVRGIEAWMHDEMDFGEHFHALRNQLARRVLQRDYPEGWGTRPEPIQDARLD
FACENCE_FW6223E01D13XAFACENCEE_8102750F056389VQIVVAAQSVEGLGNQRQAPRLLSSCAGGVIVHQCPDPERLLAMGGTVRVLEHNWELDAYGPRGIAKTRLTERSRVDPEQVRNADQGEAWVIQAGRAVHMQVLPPPAPAEPAAELAGQLPAGEQGDTAPLPRVVPPGRIAAAVALTVAVARRVRR
FACENCE_FW6223E01D1G91FACENCEE_9499580F095940RDAPCAAPTGSHPTETFVEACHLASLKTWRDSSLTADPLNPEGR
FACENCE_FW6223E01D1Y12FACENCEE_8413100F072732PYGLYADVGRVASFAEGRTGYREWALRSGRLGDIHALDDRYDHDTDELMG
FACENCE_FW6223E01D826HFACENCEE_476820F022748LKKLLRGLVLLGALAGAAYAARSYMQGEPAGQDAVQLVFDDGSMHSLASNTVQGQEFTDIARKVVEIGV
FACENCE_FW6223E01D95FJFACENCEE_6465980F018678MRPEEDPLGGREDVLGRLIEEKAGEGRTVWASFNWVVPVELETALEQQERLSELVGSGQQLVVKTAALEEAIDEWSSATLRRAQSSHSGTIMASDNGLSLNRTTPM
FACENCE_FW6223E01DAD5LFACENCEE_8530800F003179RYHHALGYLLKEAALLEDEHMAFDVGGQHPHSYTLYFFTRRAVKLLEG
FACENCE_FW6223E01DN4ALFACENCEE_6821570F000733PMRHPTVQVPDIGPMDHAWDVLGEWQAEFELPESESPVHGKVMFRSWGDAELQLDPVEAAIAGIPSSVPLERASEVHLTDAGGGALQWVLHAPSTNWSLQATLWPGSLHLFVHDPEDEEEHLYRARATRNREYYLRKYP
FACENCE_FW6223E01EFHDLFACENCEE_1282310F007637VDPDTEVAGMGDEISLTADASYELFGQLVDEGYVDPGRVLGTGGAMPGHTSRIVGREHNMTVVGDEVRLTDKGLAEIG
FACENCE_FW6223E01EIO8TFACENCEE_7082380F025512LDRTVRLLEGAIEAPALSLGPATRLVDDHIHRNEVARRSHVKTWRARHKRVKILPL
FACENCE_FW6223E01EJP9VFACENCEE_4767280F069695ALIVVQIALLAATIGAFAFMLSSLWATLRLTFVGMPESAPEETEAEESSDVRS
FACENCE_FW6223E01EMSFZFACENCEE_3506940F073081RGAEALYELETAFREDGWPSEDFVYDAEHDLYRFPDGGFAFSKEYANERRLREMGIIG
FACENCE_FW6223E01ERQQVFACENCEE_379310F014544MPETTVTRRTVLATSAFGAAALALPFVREARAAAGGVEPKGRMTLAWHTNIASRWLDPQQHDGTAS
FACENCE_FW6223E01EVB99FACENCEE_7707630F032480IRQRTLGKDNAMDEGHAPMAEYTALIEQLFTKRSTLVQAMVANPEQITDEQIRDLAWLQSAFAAVEAEHRRAERDTLHKEVQQRTGALPSLP

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