2016842005: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP17 Obsidian Pool Prime

Overview

Basic Information

• IMG/M Taxon OID: 2016842005
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0045212 | Gp0051383 | Ga0026268
• Sample Name: Hot spring microbial communities from Yellowstone National Park, Wyoming, USA - YNP17 Obsidian Pool Prime
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 24421805
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Archaea → DPANN group	1
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Yellowstone National Park, Wyoming, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Yellowstone National Park, WY
• Coordinates
  • Lat. (^o): 44.733519
  • Long. (^o): -110.404033
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046219	Metagenome	151	Y
F065251	Metagenome / Metatranscriptome	128	Y
F090961	Metagenome	108	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
YNP17_C3538	All Organisms → cellular organisms → Bacteria	1095
YNP17_FYNF10409_b1	All Organisms → cellular organisms → Archaea → DPANN group	814
YNP17_FYNF9041_b1	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales	787

Sequences

Scaffold ID	Protein ID	Family	Sequence
YNP17_C3538	YNP17_145310	F046219	LLRRAIDLRAALKLGVRVGLDEIRADEFAALVKLEEEQAEFEREKAAMPPH
YNP17_FYNF10409_b1	YNP17_19600	F065251	MYLRHFVKGKKKYYYIAKAVRKGTSVIQKSVLYIGTADTLYEKLLNLKKK
YNP17_FYNF9041_b1	YNP17_244910	F090961	MTDKITLIMKITKSPKLIDRDQDLWIFYCPFDKKWCKGTRHGYTSEFWSEMYFECEDGHKIEAPGCEMIEK