2014642002: Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) - 5_Below_upper_mesopelagic_500m

Overview

Basic Information

• IMG/M Taxon OID: 2014642002
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0056617 | Gp0051077 | Ga0011005
• Sample Name: Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA) - 5_Below_upper_mesopelagic_500m
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 8764642
• Sequencing Scaffolds: 5
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Bacteria → environmental samples → uncultured nuHF2 cluster bacterium HF0770_42C12	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha)
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Planktonic Communities From Hawaii Ocean Times Series Station (Hot/Aloha)

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine aphotic zone → planktonic material
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Hawaii Ocean Time Series, North Pacific Ocean
• Coordinates
  • Lat. (^o): 22.45
  • Long. (^o): -158.0
  • Alt. (m): N/A
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012125	Metagenome	283	Y
F047112	Metagenome / Metatranscriptome	150	Y
F049694	Metagenome / Metatranscriptome	146	Y
F097497	Metagenome / Metatranscriptome	104	Y
F105357	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
2014661293	Not Available	818
2014663201	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured nuHF2 cluster bacterium HF0770_42C12	946
2014664747	Not Available	961
2014666095	Not Available	1040
2014667867	Not Available	943

Sequences

Scaffold ID	Protein ID	Family	Sequence
2014661293	2014669284	F049694	QALYHANEERTGAAIKALDAAGKTSSAEALAAARWKQT
2014663201	2014671986	F097497	MPKKRRKRTTPKQRDPSWQLRHALGHKVEIDPKAYTRKLKHPEDIEDPEAQL
2014664747	2014674338	F012125	MLDTCYNVMKPDSGRKSFFSAGKPKNLPAFYFLVVTGIILMVLLFKWFD
2014666095	2014676528	F047112	TVKSLGQSDLKLFEGTQIKQPDACGFRLEACSLGLEACIRRLEACDL
2014667867	2014679336	F105357	MNIDKVAVSTRLKRDEDRYLVLIDVDPTPSTNDAFLNTFPNGYHGLFEFDNELDAKQCLTEVNKKLGLSKL