2013843001: Activated sludge microbial communities from Commune de Morges, Switzerland - plasmid pool Morges-2007 (PGA)

Overview

Basic Information

• IMG/M Taxon OID: 2013843001
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0056623 | Gp0051335 | Ga0011069
• Sample Name: Activated sludge microbial communities from Commune de Morges, Switzerland - plasmid pool Morges-2007 (PGA)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 28569177
• Sequencing Scaffolds: 4
• Novel Protein Genes: 4
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Activated Sludge Microbial Communities From Commune De Morges, Switzerland
• Type: Engineered
• Taxonomy: Engineered → Wastewater → Nutrient Removal → Dissolved Organics (Aerobic) → Activated Sludge → Wastewater Plasmid Pools → Activated Sludge Microbial Communities From Commune De Morges, Switzerland

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Bief, Commune de Morges, Canton Vaud, Switzerland
• Coordinates
  • Lat. (^o): 46.51668
  • Long. (^o): 6.510145
  • Alt. (m): N/A
  • Depth (m): .3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021450	Metagenome	219	N
F069722	Metagenome / Metatranscriptome	123	Y
F095356	Metagenome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
PLMO_C3844	Not Available	1372
PLMO_C4128	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	834
PLMO_FPCF1403_b1	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	785
PLMO_FPCF17101_b1	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	836

Sequences

Scaffold ID	Protein ID	Family	Sequence
PLMO_C3844	PLMO_107150	F095356	MLTSPQAKVLLNHNPDLIPIILGFQNHFEIAIDGESIAPQRMTAPPQARQFKTLTAAYSYLRTFLDYRGDVFIRLIDPTTGTGDA
PLMO_C4128	PLMO_114470	F021450	MKKTISLLALLLFFSIEMQAQITNVLNNFYSVWVKPAIPIVAGLVLIVGALANMGKVLGESRDYKGFAQGIVLYLAVYLCVVAIVSYIMAG
PLMO_FPCF1403_b1	PLMO_210060	F021450	MKKVISFLALFMLISIEMQAQVTNVLNNFYSVWVKPAIPIVAGLVLIVGALANMGKVLGESRDYKGFAQGIVLYLAVYLCVVAIVSYIMAG
PLMO_FPCF17101_b1	PLMO_259200	F069722	ARRMRVRLTAELDPKAKRKRPDLDKGAAHEKALGQGSGAALQE