2010549000: Rice endophytes microbial communities from Berkeley, California, USA

Overview

Basic Information

• IMG/M Taxon OID: 2010549000
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0056620 | Gp0052103 | Ga0026419
• Sample Name: Rice endophytes microbial communities from Berkeley, California, USA
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: Y
• Use Policy: Open

Dataset Contents

• Total Genome Size: 46747680
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Rice Endophytes Microbial Communities From The International Rice Research Institute, Philippines
• Type: Host-Associated
• Taxonomy: Host-Associated → Plants → Rhizoplane → Endophytes → Unclassified → Rice Endophytes → Rice Endophytes Microbial Communities From The International Rice Research Institute, Philippines

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere

Location Information

• Location: Philippines: Los Banos
• Coordinates
  • Lat. (^o): 14.1677
  • Long. (^o): -121.2523
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021566	Metagenome / Metatranscriptome	218	Y
F080249	Metagenome / Metatranscriptome	115	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
RicEn_FSXC3319_g1	All Organisms → cellular organisms → Bacteria	798
RicEn_FSXC82502_b1	All Organisms → cellular organisms → Bacteria	670

Sequences

Scaffold ID	Protein ID	Family	Sequence
RicEn_FSXC3319_g1	RicEn_196220	F080249	MIDATQRETPMTDNKQNKGTPDRNLISFKQKYEFDYAVKQLQKQIPDTTRQEAKDALAAAAKKISPSEGREKIMRAARKTLRD
RicEn_FSXC82502_b1	RicEn_592700	F021566	MFTCKSYDKFTARVLAGLVLAVTIVFGSLTYAVSNVQAYI