2010170001: 3_050719R

Overview

Basic Information

• IMG/M Taxon OID: 2010170001
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0055739 | Gp0050996 | Ga0026301
• Sample Name: 3_050719R
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 28728092
• Sequencing Scaffolds: 33
• Novel Protein Genes: 35
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	23
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Fimbriimonadia → Fimbriimonadales → Fimbriimonadaceae → Fimbriimonas → Fimbriimonas ginsengisoli	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Microcoleaceae → Microcoleus → unclassified Microcoleus → Microcoleus sp. FACHB-672	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hot Spring Microbial Communities From Bison Spring, Yellowstone National Park, Usa, Analyzing Thermal Gradients
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Bison Spring, Yellowstone National Park, Usa, Analyzing Thermal Gradients

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Bison Pool / Rosette Geyser, Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.6
  • Long. (^o): -110.9
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007225	Metagenome / Metatranscriptome	355	Y
F014385	Metagenome / Metatranscriptome	263	Y
F016403	Metagenome / Metatranscriptome	247	Y
F023603	Metagenome / Metatranscriptome	209	N
F024968	Metagenome / Metatranscriptome	203	Y
F028182	Metagenome / Metatranscriptome	192	N
F031015	Metagenome / Metatranscriptome	183	Y
F038030	Metagenome / Metatranscriptome	166	Y
F039409	Metagenome / Metatranscriptome	164	Y
F041223	Metagenome / Metatranscriptome	160	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
BISONR_BXAS11834_y3	All Organisms → cellular organisms → Bacteria	996
BISONR_BXAS15200_x2	Not Available	1030
BISONR_BXAS15218_y2	Not Available	1044
BISONR_BXAS16827_g1	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	849
BISONR_BXAS21218_b1	All Organisms → cellular organisms → Bacteria	754
BISONR_BXAS23892_x1	All Organisms → cellular organisms → Bacteria	827
BISONR_BXAS25716_b1	All Organisms → cellular organisms → Bacteria	746
BISONR_BXAS33285_y2	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	739
BISONR_BXAS34117_y2	All Organisms → cellular organisms → Bacteria	897
BISONR_BXAS38011_b1	Not Available	722

Sequences

Scaffold ID	Protein ID	Family	Sequence
BISONR_BXAS11834_y3	BISONR_296320	F067777	MPKLTIEVDPKAWQRLHEQAERQGLTPEALARQLLLGELRSGGKRGRRRDRGNESLYAATLPRGSLQRVLATLNLIHTQIPLDTPPPSREEVDAYLEQERASWENSDGV
BISONR_BXAS15200_x2	BISONR_313930	F051584	MTRTEQVLQRVLDVLRDDIEAAVRSNPTVYDDCPLPEGYYFGLPDLRRVSAMPIVAVELDSETLATRTLGGVGVGRRERVVPVLVVIAHAHREEERLMRQLIQLCDAVVQSLERVPQSALWLIQEVGLVDFSPPIEGEQSMPFVRYASVRAVVQVRHARGEVG
BISONR_BXAS15218_y2	BISONR_314110	F023603	VLYTTADFSGQYRLDSNAITEADYQRAIDEHERTLLEHFFDPASVDKIYAALPSSPPAVGVRNVMRDLALPFIFGRIKMGVGSSMAGEPNTRGYTRIGYTPYLAWRGSETLRRLMRFAPFVVQTELLAPSTTVAYPSPIPQAPDFVAIGDPVVAYTAAGEVRTTVVGVTAMDITLADPLPAGQVKIIVENLRVRISGAYLTF
BISONR_BXAS16827_g1	BISONR_322740	F047697	MNLTILARLAPILLLLSIACESGKKGTFQLPPDLGKGLTPADSLRAVLNYLEGRREYEAETLRFHYMYEYIRTLARQRTDTLPALVQELRSWAQKSQYPLGEGVT
BISONR_BXAS21218_b1	BISONR_344250	F041223	MQPKVCLVLNNLGNFNRAWTQILRNLGIDYTLCIATSTAASANIQTPQGVFAAGSPDLLGYFRQFDAVILCDN
BISONR_BXAS23892_x1	BISONR_358250	F045123	MARRAKPSGKPTTRVRETLTRLGYAEHEDFEYEVEVRLYGNRRLYADVMLFQGDTPLVVVEVEGHARQQRAGYEEARLKGAAWNLENPVPLLWVAAGNHDALYQLQPSQSSIQYAPLDGEPPAELLAPARLLEAIGDYLRRTETEAGQELRYREIFQRALAESRGNSAHEKFRNW
BISONR_BXAS25716_b1	BISONR_367530	F024968	MQPKVCLVLFSFGTFNRAWTQILRNLGIDYTLCIATSGGTGANIQTPQGVFAAGSPGLRGYFRQFDAVILCDNTSNLAATSLINYSVFWMRWNDPEDPAFLFFNPHFSAAITESAYNSNFPSDFPIVRPSPSDIAGTLYAADGGSASSISLLGVGATSGRGACVLFLAENIRAHVMTICNTHTNNIPYYWKLDTAKHSVLASTTYTHRVARNGKAGEILAVPAPPISSEDTETYPADCVVAYRYRNIF
BISONR_BXAS33285_y2	BISONR_402500	F070749	MNPTILTRFAPILLLLSIACQGGRKSTFQLPPDLGKGLSPADSLQAVLNYLEGQKAYEAETLRFHYMYEYIRTLARDKPDTLPALVQELQSWAQKSQYPIGEGVAALGEAVGWWIQGQYDSALSRAQTALRIFQEKERSDYEGKTHNLIGGIHYAQGRYA
BISONR_BXAS34117_y2	BISONR_407350	F081382	MSKHGEVLEIAILPAGGRAKQVVQRALSKRRAQIRVHSMCDIADARAPTLVLIDGSALQGGESALAGAITMLKQSAWRDAPIVILDDSGSDLRRGFAAGYAARIRLDSSPEAIAQLIEKMMPTAV
BISONR_BXAS38011_b1	BISONR_429550	F047697	MNPTILARLAPILLLLSIACEGGKKSTFQLPPDIGKGLTPDDSLRAVLNYLEGRREYQAETLRFHYMYEYIRTLARQKPDTLPALVQALRSRAQKS
BISONR_BXAS39919_y2	BISONR_439390	F024968	MQPKVCLVLFSFGTFNRAWTQILRNLGIDYTLCIATSGGTGANIQTPQGVFAAGSPGLRGYFRQFDAVILCDSTNNLAATSLINYSVFWMRWNDPEDPAFLFFNPHFSTAITESAYNSNFPSDFPIVRPSPSDIAGTLYAADGGSASSISLLGVGATSGRGACVLFLAENIRAHVMTICNTHTNNIPYYWKLDTAKHSVLASTTYTHRVARNGKAGEILAVPAPPISSEDTETYPADCVV
BISONR_BXAS39919_y2	BISONR_439400	F031015	WGRIEIPSTGDGYYDQYRIEVQRTAGSSNYNLLSKIVGVR
BISONR_BXAS9066_y2	BISONR_283610	F083525	VLWEGRTRCDSLXRSLNGDVVAILPTVQGTTPYDRLYWTGYALGSAPVNVNMRVLARAVDLNGVPLGSGWRAIGQATIQTPPLRWFRVEIPEGHWDEYRLEVRSATPRLVYSRLIGSQGYWRE
BISONR_C1586	BISONR_43890	F014385	VKPCELPDWWQLVQLALVRSALEQLAPEEERAVWLYAEGARLPKRERQLAETAIAKVRRMLNLE
BISONR_C1656	BISONR_45860	F067777	MPKLTIEVDPKAWQLLHQQAELRGLTPEALAQQLLLGELRARGKRSRRRDMDNESLHAASLPRGSLQRVFTTLERIDTLLPLDTPPPSREEVDAYLEQERASWENPDGV
BISONR_C182	BISONR_05330	F081382	MSKHGEGLEIAIVPAGGQAKQVVQRALGKRRAHIRVHSLCDIADASAPMLVLIDGSALQGGESALAGAITMLKQSAWRDAPIVILDDSGADLRRGFAAGYAARIRLDSSPEAIAQLIEKMMHTAV
BISONR_C2584	BISONR_72590	F067777	MPKLTIEVDPKAWQLLHQQAELRGLTPEALAQQLLLGELRAGGKRSRRRDMDNESLHAASLPRGSLQRVFTTLERIDTLLPLDTPPPSREEIDAYLEQERASWENSDGV
BISONR_C2607	BISONR_73220	F063724	MPSSWLRRWRDAYYTENPVVWLLAKTESELCLRQISAPEPAEAGSAPSRLQLLKSDPVYSTRYFLWADEKEFERTLLVPWHLPSNRWMPVSDQIYLAVASLITMTVLVIHYALAKSPVWVGAVGVGVVIVMFFAPMARPMLALHSLAQTLTAETPLHIGVSRLTPAHLVYGALLYGVGRIARTSAVYGLLPALLVATTAQGTVFRGVPTAILLWGYSVCVGALWILCTLAIVYGQATRLYGASRDWVRWQNILALAAGLLGASLLAVSVPAPVPVPALTAWVHTPLWWWGFVPPLGIVSGLAVEFHPLWTLSHIVGMLLYIGLGVIACLRLLRGVWRSQEQPLNAETEGWE
BISONR_C3349	BISONR_94550	F078762	VICLADGKKLKGGIERGDVLSLYELRGESLFTKAFYMCSHHMYLLSQLNKKLPSTSDTAKAFNTNTATPSAATE
BISONR_C3579	BISONR_100540	F028182	MPKVSISEAARRLETTEEVIREWIRLGLLDVELPSAKPRRTRELNPAFQPTSATPEPNVDLEQLYQ
BISONR_C3798	BISONR_106980	F028182	MRYNTLVMPKVSISEAARRLETTEEVIREWIRLGLLDVELPSAKPRRTRELNLAFQPTSAVPEPKVDLEQLYEVAEREGWLLLSLEAWDAADSEP
BISONR_C3911	BISONR_111080	F038030	QVANAKPVPADTLLVATTAVTTDANRDLLGSTATELPTLDGCMQYRKLVWFYFRASDAATTYRVLARATDHNGAPLGSGWQELATGTLPGGANSWGRIEIPSAGDGYYDQYRIEVRVTSGSGYFLTSKIVGVR
BISONR_C4066	BISONR_115510	F028182	MRYNTLVMPKVSISEAARRLETTEEVIREWIRLGLLDVEPLPLERQRAKENILALHVSGIDLDSCVRGIDSEPRVDLEQLYEVAEREGWLLLSLEAWDAADSEP
BISONR_C415	BISONR_11860	F063724	MPSSWLRRWRDAYYTENPIVWLLAKTESELCLRQISAPEPAEAGSAPSRLQLLKSDSVYSTRYFLWADEKEFERTLLVPWHLPSNRWLPLSDQLYLACASLVTMTALVIHYALAKSPVWVGAIGVGVVIVMFFAPMARPMLALHSLAQTLTAETPLHVGVSRLTPAHLVYGALLYGVGRIARTSAVYGLLPALLVATIAQGTVFRGAPTAILLWGYSVCVGALWILCTLAILYGQTTRLHGASHDWVRWQNIVALATSLLGAGLLASSIPALVPAPAPTEWIRTPLWWWGFAPPLGIVSGLAVEFHPLWTLSHIVGMLFWVALGAVGCLRLLRGVWRSQEGAFDAEREGWE
BISONR_C4477	BISONR_127250	F081382	MSKHGEVLEIAILPAGGRAKQVVQRALSKRRAQIRVHSMCEIADARAPTLVLIDGSALQGGESALAEVITLLQQSAWRDAPIVILDDSGADLRRGFAAGYAARIRLDSSPEAIAQLIEKMMHTAV
BISONR_C469	BISONR_13370	F007225	MRKFAAITALLAVATTASFAQFGIYGATADGGSTGLGGGFIGGFENGQEFDLLIRMDVPPGVPRFPRNGGGSLAFNFNPRYIDIKLFDVVTGDPITIAQAVAGAAVGEIVNLGAYAYPGTTIAGRDLVGAAAVGARKNADGTIGVRIAFLSTSPAVSNATHAEPFVRTGPEDDDGNRRLPVVIVNWLNIRDDFGVNGTYTVQNEGSFVLVYESAAPGASFRTQEVPINGFSFTYVPEPAS
BISONR_C5537	BISONR_158170	F067777	MPKLTIEVDPKAWQLLHQQAELRGLTPEALAQQLLLGELRARGKRSRRRDRGNESLHAASLPRGSLQRVLATLNLIHTQIPLDTPPPSREEVDAYLEQERASWENSDGV
BISONR_C6016	BISONR_172690	F087246	MDWETWMDDTYEMCRALDALEHARQVMAFHAQGYRQVATLAGLALERIEAVRDSQNWVQLQEAIHEVEALLTSILLQATERGENLVECANGYGNRD
BISONR_C6918	BISONR_197110	F056638	MPSSWLRRWRDEYYTENPIVWLLAKTESELCLRQISAPEPAEAGSASSRLQLLKSAPVYSVYWTDEKEFERTLLAPWHLPSNRWLPLSDQLYLACASLVTMTVLVIHYALAKSPVWVGAIGVGVVIVMFFAPMARPMLALHSLAQTLTAETPLHIGVSRLTPAHLVYGAL
BISONR_C7389	BISONR_210200	F016403	MTPKVCLVMREFGIFNRAWTQILRNLGIDYTLCVTTGSGAGVSIQTPQGVFAAGSPDLRGYFRQFDAVILCDNTNDLAAPSFINYSVFWLRWNDPEEPCIPVFQSALFRGDYR
BISONR_C7390	BISONR_210240	F039409	MQPKVCLVLNNFGTFNRAWTQILRNLGIDYTLCIATSGGTGANIQTPQGVFSPSSPDLRGYFRQFDAVILCDSVNNLAATSLINYSVFWMSWNAPEDPAFLFFNPHFSAAITESAYNSNFPSDFPIVRPSPSDIAGTLYAADGGSASSISPLGVGAVSGRGACVLFPAENIRAHVMTICNTHTN
BISONR_C7502	BISONR_213340	F070749	MNPTTLARLVPILLLLSIACEGGKKSAFQLPPDLGKGLSPADSLQAVLNYLKGRREYEAETLRFHYMYEYIRTLARQKPDTLPVLVQALRSWAQKSQYPLGEGVAALGEAVGWRSQGQYDSALSRAQVALRI
BISONR_C769	BISONR_21640	F031015	IEIAATTDGYYDQYRIEVQRTAGSNYSLTSKIVGVR
BISONR_C7719	BISONR_219080	F063724	MPSSWLRRWRDEYSTENPIVWLLAKTESELCLRQISAPQPTEAGSAPSRLQLLKSDSVYSTRYFLWADEKEFERTLLAPWHLPSNRWMPVSDQSYLAVASLITMTVLVIHYALAKSPMWVGAIGVGVVIVMFFAPMARPMLALHSLAQTLTAETPLHIGVSRLTPAHLVYGALVYGVGRAARVSAVYGILPALLAATTAQGTVFRGLPTAILLWGYSVCVGALWILCTLAIVYGQATRLYGASRDWVRWQNILALAAGLLSASLLAVSVPAPVPVPALTAWVHTPLWWWGFVPPLGIVSGLAVEFHPLWTLSHIVGMLLYAGLGAAACLRLLRGVWRSQEQPLNAETEGWE
BISONR_C7769	BISONR_220510	F056638	MPSSWLRRWRDEYYTENPVVWLLAKTESELCLRQISAPEPAEAGSAPSRLQLLKSAPVYSVYWTDEKEFERTLLAPWHLPSNRWLPLSDQLYLACASLVTMTVLVIHYALAKSPVWVGAIGVGVVIVMFFAPMARPMLALHSLAQTLTAETPLHIGVSRLTPAHLVYGALLYGVRRIART