2009439000: 2_050719S

Overview

Basic Information

• IMG/M Taxon OID: 2009439000
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0055739 | Gp0050992 | Ga0026417
• Sample Name: 2_050719S
• Sequencing Status: Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 31802272
• Sequencing Scaffolds: 14
• Novel Protein Genes: 15
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	9
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	1
All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	2
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Hot Spring Microbial Communities From Bison Spring, Yellowstone National Park, Usa, Analyzing Thermal Gradients
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring → Hot Spring Microbial Communities From Bison Spring, Yellowstone National Park, Usa, Analyzing Thermal Gradients

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Bison Pool / Rosette Geyser, Yellowstone National Park
• Coordinates
  • Lat. (^o): 44.5696298
  • Long. (^o): -110.8651817
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003222	Metagenome	499	Y
F021443	Metagenome / Metatranscriptome	219	Y
F038745	Metagenome / Metatranscriptome	165	Y
F043237	Metagenome / Metatranscriptome	156	Y
F051572	Metagenome / Metatranscriptome	144	N
F069506	Metagenome	124	N
F075483	Metagenome / Metatranscriptome	119	Y
F084856	Metagenome / Metatranscriptome	112	N
F086364	Metagenome	111	N
F104114	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
bisonPool14jan08_BXAW11463_g1	Not Available	772
bisonPool14jan08_BXAW14812_y1	Not Available	894
bisonPool14jan08_BXAW18328_b1	Not Available	746
bisonPool14jan08_BXAW18693_g1	Not Available	817
bisonPool14jan08_BXAW22735_y2	Not Available	937
bisonPool14jan08_BXAW2344_y1	Not Available	792
bisonPool14jan08_BXAW4532_x1	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Sorghinae → Sorghum → Sorghum bicolor	677
bisonPool14jan08_BXAW611_g1	Not Available	715
bisonPool14jan08_C10523	All Organisms → cellular organisms → Bacteria → Aquificae → Aquificae → Aquificales → Aquificaceae → Thermocrinis → Thermocrinis ruber	4079
bisonPool14jan08_C11558	Not Available	825
bisonPool14jan08_C11910	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1392
bisonPool14jan08_C4958	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1606
bisonPool14jan08_C6206	Not Available	1249
bisonPool14jan08_C6406	All Organisms → cellular organisms → Bacteria	1326

Sequences

Scaffold ID	Protein ID	Family	Sequence
bisonPool14jan08_BXAW11463_g1	BISONS_36907	F069506	MEVMSMQLTYTEEQIKQAIEEVWQELLQEADAESYSLEEYLEDYRKYWDDPCFPNDIPELIMRTVEKIVGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREYTSDGVNVHRFIHVAGTVVDYEDIVRLVTKLLNQIQSALTAA
bisonPool14jan08_BXAW14812_y1	BISONS_39157	F069506	MEVMSMQLEQLTYTEEQIXQAIEEAWQELLQEADAENYSLEEYLEDYRKYWDDPEFPNDIPELIMRTVEKIVGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREYTFDGVNVHRFINVAGTVVDYEGIVRLVTKLLNQIQSALANA
bisonPool14jan08_BXAW18328_b1	BISONS_41214	F021443	KLTFMFKSSIATCHNYDYSYYQINGILSFAVMDLVFKIMKQQKRKSIILKKRKSIIHLLNYIDTLNFNFNRKKFEVDLFLKNNYKSELLHKLYLHRSSHREKYYKGFYKDNLKAIERKNLCIIRFETDYASRIQPKNLNLVAMLMHILDKEEIDMIEGNGIIFYCVFLM
bisonPool14jan08_BXAW18693_g1	BISONS_41444	F104114	MERLRLWRSMTQDERFTAAEKELKDAIVARYDEFADEWSLSRSVEDIAPGALAEIVIQTVEALLGLQWQLEWDYDADADDMELDSGATAYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFRDAVQAVVDLADIIAEKLLAVRSQVLSLKEVQ
bisonPool14jan08_BXAW22735_y2	BISONS_43820	F086364	MEREKIIAALETAFAEISGAEYEDEPITFAEFLESFAKFRDPDFPVYWIPWTIEEAVEELTGRKFGWHEDALKDEWNYTGEFSFICVDPETLKCLTAERSNGSCTVSVVFPILSIDDAVQAVEYFLRLVQQA
bisonPool14jan08_BXAW2344_y1	BISONS_31451	F069506	PKNKIKQAIEAVWQELLQEADAENYSLEEYLEDYREYWDDPAFPNDIPELIMRTVEKIVGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREYTSDGVNVHRFINVAGTVVNYEDIVRLVTKLLNQIQSALADA
bisonPool14jan08_BXAW4532_x1	BISONS_32498	F003222	MRHDMESCDQGGEDQDEAWLDGPVARVKGKSEALKRGTACDGEA
bisonPool14jan08_BXAW611_g1	BISONS_33563	F104114	MERLRLWLSLTQDEKFAAAERELKGAIIARYDEFADEWSLSRSVEDIAPGTLAEIIIQTVETLLGLRWQLEWDYDADADDMELDSGATTYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFRDAVQAVVDLADIIAKKLPVVRGRVSLIKEVK
bisonPool14jan08_C10523	BISONS_27378	F043237	MELERTARYIAQLSSRGYKYAVVGKLARYDKKLVKRLEYEGFVFYLCRFQTKKEVVEYCLERVEGTFRVYCLSAKPLEFPNAPLKLHYDEKTGRLRLLAQRSFINECLRVIERASSLKYPNHKLYTIKVNEALRNLYSILAYTYNDRERLRAIKRKVKHLFVSALKENYGIEPKKAMEEYRRFVVKFSDVLRKKQRANSSTS
bisonPool14jan08_C11558	BISONS_29576	F021443	MRYLLNDEKLTFIFRSSHVVCYNHGHSYYQINGILSFAVIDLAFKIVKQQKRKSIILKKRKPIIHLLNYIDILNFNFKSNEFNIILSLKNNYKTQLTHNLYLHRISYRRRYYKDFYKDSLRVIEHENLCIIRLEDDYDSRIQPKNSNLVAMLMHILEKKEINTIDDNGIIYYCAFLM
bisonPool14jan08_C11910	BISONS_30392	F075483	MIELLAVQAITTAALAFFVIKLRRELWPVVATAGPAYASFWVRSVDVLVLAGPQFEIGKSVVRVRWAFTEELFLRHRLRVYDVAMHPHCHHHYAMWRAWLNGDSRYECEVEKPRGLARLYTKAIDVFCKEKEPPKEVEIIPTWARKRRYKRMLRQLREDAARRRSAEKPNK
bisonPool14jan08_C4958	BISONS_13049	F051572	MSRGRMHGGPFAEVWTFADVVPEGGCKKSVQFLNTHLELCVLAALIKTAPAGSMIKLRPEIVRRLVEELAAAARPDREKARNVLLKKAGEVLAQLRRELGDKTPAEALLAKLAELFLKELEA
bisonPool14jan08_C4958	BISONS_13050	F038745	MDRSRFIPHPFRRFSMDKAVVVVCSELMQISLTFSAYYPLCSGGPPCDFAEAMERLIRRAASARGAEELLEAINGRVRLEELDLPDPALEDLAEELGPEPPWLDALAASFFRLYLGLGRRRRVDGRDLALVLCLWVEKKRREDPRNPLWRVAELEPDRLYTEEEAREALKINETLFRRLWRRASVFGWPGEKAYGFQLILAALSLMAAPPRSE
bisonPool14jan08_C6206	BISONS_16530	F084856	MFVLYFHEDIKPMERGDAMSDLSNLMIVTHLYTKEHAEALSQTLTEWRKLAPSSQIIVGYYQSRFQPSDFSNLMQDDAVEFVPVSNSSYGAAYDTLLERTVGKPILILAPYAVPKEWFIGARGSLLKWFESYAIIGRYKQPRILVSDAILMPLVAPVIVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGYPVLTLPRNCNPVRYVKPETQTDKKSGKPSGRR
bisonPool14jan08_C6406	BISONS_17077	F104114	MERLRLWRSMTQDERFTAAEKELKDAIVARYDEFADEWSLSRSVEDIAPSALAEIVIQTVEALLGLQWRLEWDYDADAGDMVLGSGATAYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFRDAVQAVVDLADIIAKKLPVVRGQVSLIKGGEVRWRIGCSS