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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 2008193001 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0056601 | Gp0051057 | Ga0052229 |
| Sample Name | Marine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica - Winter |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 12733012 |
| Sequencing Scaffolds | 21 |
| Novel Protein Genes | 23 |
| Associated Families | 21 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → unclassified Oceanospirillaceae → Oceanospirillaceae bacterium | 1 |
| All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 2 |
| Not Available | 11 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii | 1 |
| All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosarchaeum → unclassified Nitrosarchaeum → Nitrosarchaeum sp. | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Bacterioplankton Communities From Palmer Station B, Arthur Harbor, Antarctica |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Bacterioplankton Communities From Palmer Station B, Arthur Harbor, Antarctica |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → marine water body → planktonic material |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Arthur Harbor, Palmer Station, Antarctic Peninsula | |||||||
| Coordinates | Lat. (o) | -64.766667 | Long. (o) | -64.05 | Alt. (m) | N/A | Depth (m) | 10 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004613 | Metagenome / Metatranscriptome | 431 | Y |
| F005431 | Metagenome / Metatranscriptome | 401 | Y |
| F008174 | Metagenome / Metatranscriptome | 337 | Y |
| F012511 | Metagenome / Metatranscriptome | 280 | Y |
| F013024 | Metagenome / Metatranscriptome | 275 | N |
| F016456 | Metagenome / Metatranscriptome | 247 | N |
| F034244 | Metagenome | 175 | Y |
| F034720 | Metagenome / Metatranscriptome | 174 | Y |
| F035964 | Metagenome / Metatranscriptome | 171 | N |
| F040182 | Metagenome | 162 | Y |
| F046631 | Metagenome / Metatranscriptome | 151 | N |
| F054360 | Metagenome / Metatranscriptome | 140 | N |
| F058644 | Metagenome | 134 | Y |
| F065210 | Metagenome / Metatranscriptome | 128 | Y |
| F069046 | Metagenome | 124 | N |
| F074047 | Metagenome | 120 | Y |
| F079216 | Metagenome / Metatranscriptome | 116 | Y |
| F090482 | Metagenome / Metatranscriptome | 108 | N |
| F090895 | Metagenome / Metatranscriptome | 108 | N |
| F094406 | Metagenome / Metatranscriptome | 106 | N |
| F101329 | Metagenome / Metatranscriptome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 2008208295 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → unclassified Oceanospirillaceae → Oceanospirillaceae bacterium | 836 | Open in IMG/M |
| 2008208842 | All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 1378 | Open in IMG/M |
| 2008209197 | Not Available | 802 | Open in IMG/M |
| 2008209580 | Not Available | 1259 | Open in IMG/M |
| 2008210536 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter giovannonii | 809 | Open in IMG/M |
| 2008210666 | Not Available | 840 | Open in IMG/M |
| 2008212940 | All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → Mamiellophyceae → Mamiellales → Bathycoccaceae → Bathycoccus → Bathycoccus prasinos | 802 | Open in IMG/M |
| 2008213095 | Not Available | 823 | Open in IMG/M |
| 2008213378 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria | 1217 | Open in IMG/M |
| 2008213599 | All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. | 1372 | Open in IMG/M |
| 2008214352 | All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosarchaeum → unclassified Nitrosarchaeum → Nitrosarchaeum sp. | 694 | Open in IMG/M |
| 2008215913 | Not Available | 784 | Open in IMG/M |
| 2008217511 | Not Available | 850 | Open in IMG/M |
| 2008218863 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 752 | Open in IMG/M |
| 2008219128 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 679 | Open in IMG/M |
| 2008220836 | Not Available | 786 | Open in IMG/M |
| 2008220881 | Not Available | 845 | Open in IMG/M |
| 2008221055 | Not Available | 822 | Open in IMG/M |
| 2008221086 | Not Available | 797 | Open in IMG/M |
| 2008222525 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae | 755 | Open in IMG/M |
| 2008223276 | Not Available | 705 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| 2008208295 | 2008210565 | F094406 | MFTKVSAVRPYWSEIREKMWNHISVAGFTIDGADIIGVNDSDDQIMSALKTRKDHILLVPYNASASSETAMKTGLDIVFSVNENIKILAESPIIMPVANALTSALRQKLAQEREGGRLTPELDERILFIAESDLNRPELGGIL |
| 2008208842 | 2008211313 | F090895 | MNKRDQGRADKRDAKLLQKEEDLKTIRSVVSNKNTSALDITKDSGKATSLVSYKRTTEVVKLILRGVRYTDIMEYCEAHWGIKKRMASIYYKKALETFAEQFSEEREYEMDKHAIMLQDLYSQGYKAGDLNICRLLLQDIAKM |
| 2008209197 | 2008211783 | F040182 | DNAKNNISSILGTNQQFGYSAQPYGLLSSTNMADNPFNIPYLQQRGLI |
| 2008209323 | 2008211954 | F101329 | MALTLLAKNPAELSGKSTCIPTVNNGAVTIKIINNTNITSTKGVTLISLIGSLDERLNLKAILYY |
| 2008209580 | 2008212288 | F079216 | MNKLVCKKCSHGMLLHGSVDGVGYCMEGNGVWCDCTVKGKTYEEEVELLKHEMFDL |
| 2008210536 | 2008213581 | F016456 | MPRKPNYKDLLKKFKKRNIKNPERIATAYVKGLTAGSKKKAAKNLAGIIN |
| 2008210666 | 2008213760 | F035964 | GSKHGKLVVAPAKVPTAKVPPAKKVVKFREIFGIRLGAKPSIELRTAVKVLEKNKERSNMSFNYILSEYKKEMIRNDKKTDGKNFEGRLRRILYRSIESGITRESIQGIKFNLNANYKGIKVITSQPFVFNNSANVARKDVEENLYTFKFNKVVTLINKAELKTVADKVKAFKTLIR |
| 2008212940 | 2008216806 | F090482 | APTLAVTEEPKRIQTQYLEQQQLTENVKEDEQKLVQSFKKLMVEQRGKILKVPPGQQFALKTFHDYVWNRGADGQPTSWVINITGKKAKETTIQMRFGKENDWKLGQVYLFFTRFLPPECLKDVRRCLKKERIGPILKRLRDKEALNPSTTLSTNQALYVLYRNFPGLLPEFQTDLNWLNNFNAVTKKKADSYIADKRKYTIKYGFTDIKKIFKDTFGRESKEFLYISVYEEFPSRDDLGKLVINPPNMTGNVEKTMNCIVKKNGV |
| 2008213095 | 2008217017 | F074047 | MKDKIILETVETIIDNLEEQVVEYMFEYGEYSETNDKFYSDKEELTKLVIKELNSRMRESECGIL |
| 2008213378 | 2008217411 | F013024 | MEKPATKFIATKLFWLGVIGTYILAGVLLNRLETNAGYEELRFTSLIPTLFYFFILFLSYRSFKTQAVRTTILQFVTQMLLLLPLMAMYMAVILFTTKFSS |
| 2008213599 | 2008217730 | F090895 | MNKRDQGRADKRDAKLLQKEEDLKTIRSVVSNKNTSALDITKDSGKATSLVSYKRTTEVVKLILRGVRYTDIMEYCEAHWGIKKRMASIYYKKALETFAEQFSEEREYEMDKHAIMLQDLYSQGYKAGDLNICRLLLQDIAKMKGIVIDRVDVTSGGE |
| 2008214352 | 2008218650 | F065210 | KQARHVSQSRVINIEIKKEQFKSYDGIHELVIVHSSHVRSLEVAQYILDMQSEVLMLKNIIEDFRQKEKKLEKSLDITGRS |
| 2008214356 | 2008218656 | F069046 | MNNPYVYRASRIHATFAAGQGYTTEIVPRGEEEIPDDQLDNWQKTTSIFVPYWNKEMTPEQILDKIDKMAVDMDLGSNVFNAYFTSLEQGRCVLALTPLETDEEGKFRMPEQIRLIRPEFTERPVINENTAELEGVRIIGVRSPTRDNILPRNRMIYLMHGFNNELFSDYYGDSKVARISDEANTLNIILNQDYERAAESAW |
| 2008215913 | 2008220532 | F012511 | MGMVDKKYSNVDKKTAEILEEAKLLLEEKGYGVSKPREKSIARELMNAAYGNAFKAMSKDPDLTVRKICLKAIEDKFFDTCLDTLIKGPKKRAAFDNKSPKTWTEKTITQDIKTKGHFKRFKLIEQYIKMDMNGTRTLLDPDYRPHSDKVVIKKIK |
| 2008217511 | 2008222357 | F008174 | MNMTHRARGGPFITNVDGEDFVIDGFMKYDGYGDECKELYFAGVALFQDEENKENGNLVFQFCFEYSYDTDEYKCYSKHFSDEIVENDFAYFIVENYERSCRNVKEVLKMRE |
| 2008218863 | 2008223942 | F058644 | LAPNLHEIKLEAKNVEKTNPIRGKKTAYIIKIIAVIKISKIFPNLGHLGFISGLKIRNKDDVIKKKETIYGYVFGPMWSEIKLSSTMYAEKM |
| 2008219128 | 2008224233 | F054360 | MSNYRLLKKKKAEKILDKIKNNSPSIIFKTKTMTVTLKTKEQLKKWLDMYPTGEYTFATE |
| 2008220836 | 2008226437 | F034244 | VIVKNKLHKDVLAWEVEIEDLNIDVESLDYKLQDGSLFNKITTRFENHNKELKQKVLNALDLEAIKIIIPKYKEIDIKIFKDAPGFKLVPHYDNRDHKGFIMINLIDNINSTVFYNINEELLCEASNKKNKGVFHVLHQRPHVMHAIENTSNKIRYTTIAFIK |
| 2008220881 | 2008226501 | F046631 | MIKLKKLLIKEEVDRKELKQHLKDAIDATNNLSIAVNGFLNVFTRYHKDVRSALGDPLWVMVNKTINVRGKVNKFSRLEKTFC |
| 2008221055 | 2008226744 | F065210 | MEIKKEQFKSYDGIHELIISHSSHIRSIDVAQHILDMQNEITMLKNIIEDFRQKEKKGERIIDISR |
| 2008221086 | 2008226790 | F034720 | MDTKSNKRPIEDPVANKKRLISKTIIYDESKPNQWLDDPPLEIWDHVIIPMLGLKDLALARPVCTFFEAYWQDKFSNNVLPLRVGNDVATINDVMGVIEILSSRREYTKLNPFLVLLDKGEHQITSSWTGENEEEDEGNEPLELASTLGISRSNITFLGKGKDTTTILGGFSIENLENITFKLMTVTNTST |
| 2008222525 | 2008228706 | F004613 | MVLNVVKKLNLNTEDLKRQKNIISKLNLAKLPFNISPDKICALNLEMARHSSAVLKYQEDKSGIKWIFSSIKKYKVFLIIFESNELGEEIYKEKISSKLPEYSYKTVAQIVDDGIKKNFFIKLDARAKITKDLKIRNVRPSEEVIIEFINWKIDLLSSLMKFKQDLIN |
| 2008223276 | 2008229627 | F005431 | MDFDDKEKGYSAVIYIMESSKSVVVHFGGFNDISECRYFSTHIMDDLGIEDLLNLPQGVTVH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |