Metagenome / Metatranscriptome Family F079216

Basic Information
Family ID	F079216
Family Type	Metagenome / Metatranscriptome
Number of Sequences	116
Average Sequence Length	51 residues
Representative Sequence	MTVCKKCGHGMILHGCVDGVGYCSEGNGDWCNCTEKGKTYEEEIAELK
Number of Associated Samples	92
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	62.61 %
% of genes near scaffold ends (potentially truncated)	18.97 %
% of genes from short scaffolds (< 2000 bps)	75.86 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (52.586 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (32.759 % of family members)
Environment Ontology (ENVO)	Unclassified (81.897 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (71.552 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78. 12008212288 2DelMOSum2011_1000740211 3DelMOSum2011_101601844 4LP_F_10_SI03_10DRAFT_10145943 5SI47jul10_100mDRAFT_10502493 6SI54feb11_100mDRAFT_10028606 7SI39nov09_10mDRAFT_10033437 8LPfeb09P261000mDRAFT_10528043 9LP_F_10_SI03_100DRAFT_10694731 10JGI24006J15134_101210151 11JGI26238J51125_10018361 12JGI26238J51125_10522204 13JGI26242J51144_10042335 14JGI26242J51144_10206672 15JGI26242J51144_10287961 16JGI26253J51717_10357461 17JGI26273J51734_100062394 18Ga0063241_10104967 19Ga0066606_101319721 20Ga0073579_12510981 21Ga0073579_13145632 22Ga0073579_14289063 23Ga0066850_100501873 24Ga0078893_1173402921 25Ga0008649_101359483 26Ga0008649_101591232 27Ga0075441_102044012 28Ga0098048_10490242 29Ga0098055_10159073 30Ga0098055_10779903 31Ga0098060_10275613 32Ga0098051_10320034 33Ga0098050_10349904 34Ga0098036_11475683 35Ga0117902_13029563 36Ga0117920_10809355 37Ga0114918_104248561 38Ga0114996_106816713 39Ga0114996_109285152 40Ga0114993_111398273 41Ga0114994_100292506 42Ga0114930_102267931 43Ga0115011_1000401314 44Ga0115011_101034612 45Ga0115000_110131972 46Ga0115002_101550803 47Ga0123364_10438891 48Ga0123366_11822501 49Ga0114999_102507082 50Ga0098049_12066731 51Ga0098059_100520811 52Ga0098059_12089252 53Ga0133547_107934822 54Ga0181407_10147852 55Ga0181407_10386162 56Ga0181408_11142912 57Ga0206682_100788311 58Ga0222716_102350702 59Ga0233433_100015212 60Ga0233433_101361002 61Ga0233427_1000029953 62Ga0233427_102869012 63Ga0233411_101138152 64Ga0233412_100163034 65Ga0233437_11070494 66Ga0233443_10146222 67Ga0209992_101216002 68Ga0255047_104891891 69Ga0208792_10289561 70Ga0208669_100062619 71Ga0208669_10212771 72Ga0208793_11175763 73Ga0209645_100109610 74Ga0209556_10769022 75Ga0209658_10510891 76Ga0209054_11135713 77Ga0209775_10141186 78Ga0209775_10420124 79Ga0209360_11326302 80Ga0209663_11522223 81Ga0209663_12235951 82Ga0209263_11025031 83Ga0209666_11962322 84Ga0208962_10401041 85Ga0208678_10954151 86Ga0208445_10343562 87Ga0209709_101135283 88Ga0209091_100301191 89Ga0209035_101543323 90Ga0209089_100426465 91Ga0209403_105156501 92Ga0209402_101200653 93Ga0233415_101019501 94Ga0209404_1000294014 95Ga0209404_101266311 96Ga0233414_101993643 97Ga0257121_12098932 98Ga0256397_10001275 99Ga0308024_11049861 100Ga0308024_11538102 101Ga0308024_11589932 102Ga0308021_100313284 103Ga0308021_100436043 104Ga0308021_100537773 105Ga0308023_10945042 106Ga0308010_11536702 107Ga0308010_11620592 108Ga0307379_106065972 109Ga0308019_100047449 110Ga0308019_100139232 111Ga0308009_100195427 112Ga0302135_103029243 113Ga0308017_10270551 114Ga0308013_103541372 115Ga0315331_106979321 116Ga0314858_016209_530_682
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78. 12008212288 2DelMOSum2011_1000740211 3DelMOSum2011_101601844 4SI47jul10_100mDRAFT_10502493 5SI54feb11_100mDRAFT_10028606 6SI39nov09_10mDRAFT_10033437 7JGI24006J15134_101210151 8JGI26238J51125_10018361 9JGI26238J51125_10522204 10JGI26242J51144_10042335 11JGI26242J51144_10287961 12Ga0117902_13029563 13Ga0114994_100292506 14Ga0123366_11822501 15Ga0098059_12089252 16Ga0233433_101361002 17Ga0209775_10141186 18Ga0209663_12235951 19Ga0233415_101019501 20Ga0256397_10001275 21Ga0308024_11538102 22Ga0308024_11589932 23Ga0308010_11536702 24Ga0308010_11620592 25Ga0308019_100139232 26Ga0302135_103029243 27Ga0308017_10270551
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48 1Ga0233433_100015212 22008212288 3DelMOSum2011_1000740211 4SI47jul10_100mDRAFT_10502493 5SI54feb11_100mDRAFT_10028606 6LP_F_10_SI03_100DRAFT_10694731 7JGI26238J51125_10018361 8JGI26238J51125_10522204 9JGI26242J51144_10287961 10JGI26253J51717_10357461 11Ga0075441_102044012 12Ga0098050_10349904 13Ga0114996_106816713 14Ga0115011_101034612 15Ga0115000_110131972 16Ga0123366_11822501 17Ga0098059_12089252 18Ga0181408_11142912 19Ga0206682_100788311 20Ga0222716_102350702 21Ga0233433_101361002 22Ga0233412_100163034 23Ga0233443_10146222 24Ga0209992_101216002 25Ga0209645_100109610 26Ga0209709_101135283 27Ga0233415_101019501 28Ga0256397_10001275 29Ga0308024_11538102 30Ga0308021_100537773 31Ga0308010_11620592 32Ga0308019_100139232 33Ga0302135_103029243 34Ga0308017_10270551
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 14.47% β-sheet: 14.47% Coil/Unstructured: 71.05%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF14947	HTH_45	12.93
PF00493	MCM	4.31
PF01555	N6_N4_Mtase	3.45
PF01037	AsnC_trans_reg	2.59
PF00092	VWA	2.59
PF03237	Terminase_6N	2.59
PF03819	MazG	1.72
PF05869	Dam	1.72
PF06114	Peptidase_M78	1.72
PF01521	Fe-S_biosyn	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG1241	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	Replication, recombination and repair [L]	4.31
COG0863	DNA modification methylase	Replication, recombination and repair [L]	3.45
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	3.45
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	3.45
COG0045	Succinyl-CoA synthetase, beta subunit	Energy production and conversion [C]	0.86
COG0074	Succinyl-CoA synthetase, alpha subunit	Energy production and conversion [C]	0.86
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	0.86
COG0316	Fe-S cluster assembly iron-binding protein IscA	Posttranslational modification, protein turnover, chaperones [O]	0.86
COG4841	Uncharacterized conserved protein YneR, related to HesB/YadR/YfhF family	Function unknown [S]	0.86

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	47.41 %
Unclassified	root	N/A	52.59 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	19.83 %
Unclassified	root	N/A	52.59 %
Viruses	superkingdom	All Organisms → Viruses	27.59 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	19.83 %
environmental samples	no rank	All Organisms → Viruses → environmental samples	5.17 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	21.55 %
Thaspiviridae	family	All Organisms → Viruses → Thaspiviridae	0.86 %
Unclassified	root	N/A	52.59 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.86 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	15.52 %
Nitmarvirus	genus	All Organisms → Viruses → Thaspiviridae → Nitmarvirus	0.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	21.55 %
Unclassified	root	N/A	52.59 %
uncultured marine virus	species	All Organisms → Viruses → environmental samples → uncultured marine virus	5.17 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	12.07 %
Candidatus Cloacimonetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes	2.59 %
Candidatus Marinimicrobia	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia	0.86 %
Nitmarvirus NSV1	species	All Organisms → Viruses → Thaspiviridae → Nitmarvirus → Nitmarvirus NSV1	0.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	21.55 %
Unclassified	root	N/A	52.59 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.86 %
uncultured marine virus	species	All Organisms → Viruses → environmental samples → uncultured marine virus	5.17 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	12.07 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	0.86 %
Nitmarvirus NSV1	species	All Organisms → Viruses → Thaspiviridae → Nitmarvirus → Nitmarvirus NSV1	0.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	21.55 %
Unclassified	root	N/A	52.59 %
unclassified Candidatus Cloacimonetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes	2.59 %
uncultured marine virus	species	All Organisms → Viruses → environmental samples → uncultured marine virus	5.17 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Candidatus Cloacimonetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium	2.59 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	0.86 %
Nitmarvirus NSV1	species	All Organisms → Viruses → Thaspiviridae → Nitmarvirus → Nitmarvirus NSV1	0.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	21.55 %
Unclassified	root	N/A	52.59 %
unclassified Bacteroidetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes	12.07 %
uncultured marine virus	species	All Organisms → Viruses → environmental samples → uncultured marine virus	5.17 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.86 %
Bacteroidetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	12.07 %
Candidatus Cloacimonetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Cloacimonetes → unclassified Candidatus Cloacimonetes → Candidatus Cloacimonetes bacterium	2.59 %
Candidatus Marinimicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	0.86 %
Nitmarvirus NSV1	species	All Organisms → Viruses → Thaspiviridae → Nitmarvirus → Nitmarvirus NSV1	0.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	21.55 %
Unclassified	root	N/A	52.59 %
uncultured marine virus	species	All Organisms → Viruses → environmental samples → uncultured marine virus	5.17 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300022931\|Ga0233433_10001521	All Organisms → cellular organisms → Bacteria	21896	Open in IMG/M
(restricted) 3300022931\|Ga0233433_10136100	All Organisms → Viruses → Predicted Viral	1147	Open in IMG/M
(restricted) 3300022933\|Ga0233427_10000299	Not Available	64573	Open in IMG/M
(restricted) 3300022933\|Ga0233427_10286901	Not Available	694	Open in IMG/M
(restricted) 3300023112\|Ga0233411_10113815	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium	871	Open in IMG/M
(restricted) 3300023210\|Ga0233412_10016303	Not Available	2946	Open in IMG/M
(restricted) 3300024259\|Ga0233437_1107049	Not Available	1379	Open in IMG/M
(restricted) 3300024324\|Ga0233443_1014622	All Organisms → Viruses → Predicted Viral	3967	Open in IMG/M
(restricted) 3300024520\|Ga0255047_10489189	Not Available	619	Open in IMG/M
(restricted) 3300027861\|Ga0233415_10101950	All Organisms → Viruses → Predicted Viral	1264	Open in IMG/M

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.14%
Terrestrial	Environmental → Terrestrial	0.86%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	99.14%
Soil	Environmental → Terrestrial → Soil	0.86%

Habitat	Taxonomy	Distribution
Clay	Environmental → Terrestrial → Soil → Clay	0.86%
Coastal	Environmental → Aquatic → Marine → Coastal	4.31%
Inlet	Environmental → Aquatic → Marine → Inlet	10.34%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	21.55%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	1.72%
Oceanic	Environmental → Aquatic → Marine → Oceanic	40.52%
Pelagic	Environmental → Aquatic → Marine → Pelagic	0.86%
Strait	Environmental → Aquatic → Marine → Strait	2.59%
Unclassified	Environmental → Aquatic → Marine → Unclassified	16.38%
Volcanic	Environmental → Aquatic → Marine → Volcanic	0.86%

Habitat	Taxonomy	Distribution
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	0.86%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.72%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	2.59%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	1.72%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	35.34%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	19.83%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	16.38%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	10.34%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	4.31%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	2.59%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	1.72%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	0.86%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	0.86%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	1.72%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	0.86%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.72%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.86%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	32.76%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	18.10%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	12.07%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	3.45%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	2.59%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	2.59%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	1.72%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	1.72%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	0.86%
Marine	Environmental → Aquatic → Marine → Inlet → Unclassified → Marine	0.86%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.86%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	0.86%
Sea-Ice Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine	0.86%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	9.48%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	2.59%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	1.72%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	0.86%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.86%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2008193001	Marine bacterioplankton communities from Palmer Station B, Arthur Harbor, Antarctica - Winter	Environmental	Open in IMG/M
3300000115	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011	Environmental	Open in IMG/M
3300000137	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample F_10_SI03_10	Environmental	Open in IMG/M
3300000148	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 47 07/07/10 100m	Environmental	Open in IMG/M
3300000158	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 54 02/08/11 100m	Environmental	Open in IMG/M
3300000199	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 10m	Environmental	Open in IMG/M
3300000250	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2009 P26 1000m	Environmental	Open in IMG/M
3300000257	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - sample_F_10_SI03_100	Environmental	Open in IMG/M
3300001450	Marine viral communities from the Pacific Ocean - LP-53	Environmental	Open in IMG/M
3300003478	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_100m_DNA	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
2008212288	2008193001	Marine	MNKLVCKKCSHGMLLHGSVDGVGYCMEGNGVWCDCTVKGKTYEEEVELLKHEMFDL
DelMOSum2011_1000740211	3300000115	Marine	MKLVCDKCGHGMVLHGCVDNKGYCSEGNGDWCECTEKGKTYEEEISELQHERIMS*
DelMOSum2011_101601844	3300000115	Marine	MSKTVCSKCDHGMILHGCVDGVGYCSEGNGDWCECTVKGKTYEEE
LP_F_10_SI03_10DRAFT_10145943	3300000137	Marine	MTVCDKCGHGMLLHGCVGNKGYCSEGNGNWCECTEKGKTYEEEISDLQHERIMS*
SI47jul10_100mDRAFT_10502493	3300000148	Marine	MDVCKKCNHGMMLHGCVDGIGYCMEGNGDWCDCTVKGLTYEEEIKLLKTERIK*
SI54feb11_100mDRAFT_10028606	3300000158	Marine	MLLHGCVDGVGYCSEGNGDWCECTEKGKTYEEEIYELRYERSLSTMSEK*
SI39nov09_10mDRAFT_10033437	3300000199	Marine	MYDVCDECGHGMLLHGCVDDIGYCSEGNGDWCDCTTKGLTYDEEIELLN*
LPfeb09P261000mDRAFT_10528043	3300000250	Marine	MDVCKKCNHGMMLHGCVDGIGYCMEGNGDWCDCTVKGLTYEEEIK
LP_F_10_SI03_100DRAFT_10694731	3300000257	Marine	MTVCDKCGHGMLLHGCVGNKGYCSEGNGNWCECTEKGKTYEEEISDLQ
JGI24006J15134_101210151	3300001450	Marine	MSFEVCKKCDHGMGMHGCVENVGYCMDGNGDWCDCTEKGLTYEQELKLLR*
JGI26238J51125_10018361	3300003478	Marine	MTVYTVCKVCDHGMLLHGCVDGVGYCMEGNGDWCDCTEKGKTYEEEIAELK*
JGI26238J51125_10522204	3300003478	Marine	MSVCDVCGHGMILHGCVNGVGYCSEGNGDWCDCTIQGKSYDEEIESL*
JGI26242J51144_10042335	3300003500	Marine	MLPLSSKENEMSYSTCKKCGHGMGMHGCVEGIGYCMDGNGDWCNCTEKGLTYDEEVALLR
JGI26242J51144_10206672	3300003500	Marine	MSYSTCKCDHGMGMHGCVEGIGYCMDGNGDWCNCTEKGLTYDEEVALLR*
JGI26242J51144_10287961	3300003500	Marine	MICKKCGHGMILHGCVNDVGYCMEGNGDWCNCDVKGLTYEEELKALD*
JGI26253J51717_10357461	3300003583	Marine	MSYSTCKKCDHGMGMHGCVEGIGYCMDGNGDWCNCTEKGLTYDEEVALLR*
JGI26273J51734_100062394	3300003620	Marine	MLPLSSKENEMSYSTCKKCDHGMGMHGCVEGIGYCMDGNGDWCDCTEKGLTYDEEVALLR
Ga0063241_10104967	3300003894	Marine	MSKTVCSKCDHGMMLHGCVDSVGYCMEGNGDWCECTVKGKTYEEEIESIKHDN*
Ga0066606_101319721	3300004280	Marine	MDFKVCKKCDHGMGMHGCVEGIGYCMDGNGDWCNCTEKGLTYDEEVALLR*
Ga0073579_12510981	3300005239	Marine	MSYSVCKKCDHGMGMHGCVEGRGYCMEGNGDWCDCTEKGLTYDEEVALLR*
Ga0073579_13145632	3300005239	Marine	LFPLSSKENEMSFEVCKKCDHGMGMHGCVENVGYCMDGNGDWCDCTEKGLTYEQELKLLR
Ga0073579_14289063	3300005239	Marine	MSKTVCSKCDHGMILHGCVDGVGYCSEGNGDWCECTVKGKTYEEEIESIKHDS*
Ga0066850_100501873	3300005605	Marine	MTVCDKCGHGMLLHGCVDNKGYCSEGNGDWCECTEKGKTYEEEISDLQHERIMS*
Ga0078893_1173402921	3300005837	Marine Surface Water	MKLVCDKCDHGMLLHGCVDGKGYCMEGNGDWCECTEKGKTYEEELSDIQHERIMS*
Ga0008649_101359483	3300005838	Marine	MICKKCGHGMILHGCVNDVGYCMEGNGDWCNCDVKGLTYDEEIKALD*
Ga0008649_101591232	3300005838	Marine	MICKKCGHGMILHGCVEGIGYCSEGNGDWCNCDVKGLTYDEEIKALD*
Ga0075441_102044012	3300006164	Marine	MDFKVCKKCDHGMGMHGCVEGRGYCMDGNGDWCDCTEKGLTYDEEVALLR*
Ga0098048_10490242	3300006752	Marine	MSKTVCSKCDHGMILHGCVDGVGYCMEGNGDWCECTVKGKTYEEEIESIKHDS*
Ga0098055_10159073	3300006793	Marine	MKLVCDKCDHGMLLHGCVDGKGYCMEGNGNWCQCTEKGKTYEEEIYDIQHERIMS*
Ga0098055_10779903	3300006793	Marine	MTVCNKCGHGMILHGCVDGVGYCSEGNGNWCDCTEKGKTYEEEIAELKQ*
Ga0098060_10275613	3300006921	Marine	MTVCNKCGHGMILHGCVDGVGYCMEGNGDWCKCTEKGKTYEEEIAELK*
Ga0098051_10320034	3300006924	Marine	MKLVCDKCGHGMLLHGCVDGKGYCMEGNGDWCECTEKGKTYEEELSDIQHERIMS*
Ga0098050_10349904	3300006925	Marine	MKLVCDKCGHGMLLHGCVDGKGYCMEGNGNWCQCTEKGKTYEEEIYDIQHERIMS*
Ga0098036_11475683	3300006929	Marine	MTVCDKCGHGMLLHGCVGNKGYCSEGNGDWCECTEKGKTYEEEISDLQHERIMS*
Ga0117902_13029563	3300009104	Marine	MSTCSKCGHGMILHGCVDGVGYCMEGNGDRCDCTEKGKTYEEEISSIEHERTMS*
Ga0117920_10809355	3300009108	Marine	MTVCDNCGHGIILHGCVDGKGYCMEGNGDWCECTEKGKTYEEEILELQHERIMS*
Ga0114918_104248561	3300009149	Deep Subsurface	VFSLSPKENEMSYSTCKKCDHGMGMHSCVEGIGYCMEGNGDWCNCTEKGLTYDEELKLLK
Ga0114996_106816713	3300009173	Marine	SYLTCKKCDHGMGMHGCVEGIGYCMEGNGDWCNCTEKGLTYEQELKLLK*
Ga0114996_109285152	3300009173	Marine	MSVCDVCGHGMMLHGCVNGVGYGSEGNGDWCDCTIQGKSYDEEIESL*
Ga0114993_111398273	3300009409	Marine	MSVCDVCGHGMMLHGCVNGVGYCSEGNGDWCDCTIQGKSYDEEIESL*
Ga0114994_100292506	3300009420	Marine	MDMVCKKCDHGMIMHGCVDGIGYCMEGNGVWCDCKEKGKTYEEELINNNYV*
Ga0114930_102267931	3300009499	Deep Subsurface	MSFEVCKKCDHGMGMHGCVENVGYCMDGNGDWCDCTEKGLTYEQELKLLK*
Ga0115011_1000401314	3300009593	Marine	MTVCSKCDHGMILHGCVDGVGYCMEGNGDWCKCTVKGKTYEEEIESIKHDS*
Ga0115011_101034612	3300009593	Marine	MSTCSKCGHGMILHGCVDGVGYCMEGNGDWCDCTEKGKTYEEEISSIEHERTMS*
Ga0115000_110131972	3300009705	Marine	MNTVCKKCDHGMIMHGCVDGVGYCMEGQGDWCKCKEKGKTYEEELRDLKI*
Ga0115002_101550803	3300009706	Marine	MSYLTCKKCDHGMGMHGCVEGIGYCMEGNGDWCNCTEKGLTYDEEVALLK*
Ga0123364_10438891	3300009754	Marine	MSTCNKCGHGMILHGCVDGVGYCMEGNGDWCDCTEKGKTYEE
Ga0123366_11822501	3300009756	Marine	MSACKKCGHGIILHGCVDNVGYCMEGNGDWCQCTEKGKTYEEEIDDIRNEM*
Ga0114999_102507082	3300009786	Marine	MSYLTCKKCDHGMGMHGCVEGIGYCMEGNGDWCNCTEKGLTYEQELKLLK*
Ga0098049_12066731	3300010149	Marine	MTVCNKCGHGMILHGCVDGVGYCSEGNGNWCDCTEKGKTYEEEIAELK*
Ga0098059_100520811	3300010153	Marine	MICKKCGHGMILHGCVEGIGYCSEGNGEWCNCDVKGLTYEEEIKALD*
Ga0098059_12089252	3300010153	Marine	MTVCNKCGHGMILHGCVDNIGYCMEGNGNWCDCTEKGKTYEEDITELK*
Ga0133547_107934822	3300010883	Marine	MSFEVCKKCDHGMGMHGCVDNVGYCMDGNGDWCDCTEKGLTYEQELKLLR*
Ga0181407_10147852	3300017753	Seawater	MTVCNKCGHGMILHGCVDGVGYCMEGNGDWCECTEKGKTYEEELSDIQYERFMS
Ga0181407_10386162	3300017753	Seawater	MICKKCGHGMILHGCVEGIGYCSEGNGDWCNCDVKGLTYEEELKALD
Ga0181408_11142912	3300017760	Seawater	MTVCNKCGHAMILHGCVDGVGYCMEGNGDWCECTEKGKTYEEELSDIQYERFMS
Ga0206682_100788311	3300021185	Seawater	MTVCSKCGHGMILHGCVDGVGYCMEGNGDWCECTVKGKTYEEEIESIKHDS
Ga0222716_102350702	3300021959	Estuarine Water	MICKKCGHGMILHGCVEGIGYCSEGNGDWCNCDVKGLTYDEEIKALD
(restricted) Ga0233433_100015212	3300022931	Seawater	MTVCKKCGHGMILHGCVDGVGYCSEGNGDWCNCTEKGKTYEEEIAELK
(restricted) Ga0233433_101361002	3300022931	Seawater	MSKTTNICLKCNHGMLLHGCINNIGYCSEGNGDWCNCTVKGLTYEQEIELLK
(restricted) Ga0233427_1000029953	3300022933	Seawater	MTVCDKCGHGMLLHGCVGNKGYCSEGNGNWCECTEKGKTYEEEISDLQHERIMS
(restricted) Ga0233427_102869012	3300022933	Seawater	MDVCKKCNHGMMLHGCVDGIGYCMEGNGDWCDCTVKGLTYEEEIKLLKTERIK
(restricted) Ga0233411_101138152	3300023112	Seawater	MSYSTCKKCGHGMGMHGCVEGIGYCMDGNGDWCNCTEKGLTYDEEVALLR
(restricted) Ga0233412_100163034	3300023210	Seawater	LSSKENEMSFEVCKKCDHGMGMHGCVENVGYCMDGNGDWCDCTEKGLTYEQELELLR
(restricted) Ga0233437_11070494	3300024259	Seawater	MSVCDVCGHGMILHGCVNGVGYCSEGNGDWCDCTIQGKSYDEEIESL
(restricted) Ga0233443_10146222	3300024324	Seawater	MYDICDECGHGMLLHGCVDDIGYCSEGNGDWCDCTTKGLTYDEEIELLN
Ga0209992_101216002	3300024344	Deep Subsurface	MKLVCDKCDHGMLLHGCVDGKGYCMEGNGDWCECTEKGKTYEEELSDIQHERIMS
(restricted) Ga0255047_104891891	3300024520	Seawater	MICKKCGHGMILHGCVNDVGYCMEGNGDWCNCDVKGLTYEEELKALD
Ga0208792_10289561	3300025085	Marine	MTVCNKCGHGMILHGCVDGVGYCSEGNGNWCDCTEKGKTYEEEIAELKQ
Ga0208669_100062619	3300025099	Marine	MTVCDKCGHGMLLHGCVDNKGYCSEGNGDWCECTEKGKTYEEEISDLQHERIMS
Ga0208669_10212771	3300025099	Marine	MTVCNKCGHGMILHGCVDGVGYCMEGNGDWCKCTEKGKTYEEEIAELK
Ga0208793_11175763	3300025108	Marine	MKLVCDKCDHGMLLHGCVDGKGYCMEGNGNWCQCTEKGKTYEEEIYDIQHERIMS
Ga0209645_100109610	3300025151	Marine	MTVCDNCGHGIILHGCVDGKGYCMEGNGDWCECTEKGKTYEEEILELQHERIMS
Ga0209556_10769022	3300025547	Marine	MTVYTVCKVCDHGMLLHGCVDGVGYCMEGNGDWCDCTEKGKTYEEEIAELK
Ga0209658_10510891	3300025592	Marine	MDVCKKCNHGMMLHGCVDGIGYCMEGNGDWCDCTVKGLTYEEEIKFLKT
Ga0209054_11135713	3300025656	Marine	MSYSTCKKCDHGMGMHGCVEGIGYCMDGNGDWCNCTEKGLTYDEEVALLR
Ga0209775_10141186	3300025663	Marine	MSYSTCKKCDHGMGMHGCVEGIGYCMDGNGDWCNCTEKGLTYD
Ga0209775_10420124	3300025663	Marine	FPLSSKENEMSYSTCKKCDHGMGMHGCVEGIGYCMDGNGDWCDCTEKGLTYDEEVALLR
Ga0209360_11326302	3300025665	Marine	MICKKCGHGMILHGCVEGIGYCSEGNGDWCNCDVKGLTYDEEIKAL
Ga0209663_11522223	3300025672	Marine	MLPLSSKENEMSYSTCKKCDHGMGMHGCVEGIGYCMDGNGDWCNCTEKGLTYDEEVALLR
Ga0209663_12235951	3300025672	Marine	KKCGHGMGMHGCVEGIGYCMDGNGDWCNCTEKGLTYDEEVALLR
Ga0209263_11025031	3300025681	Marine	MDFKVCKKCDHGMGMHGCVEGIGYCMDGNGDWCNCTEKGLTYDEEVALLR
Ga0209666_11962322	3300025870	Marine	MSFEVCKKCDHGMGMHGCVENVGYCMDGNGDWCDCTEKGLTYEQELELLR
Ga0208962_10401041	3300027048	Marine	MICKKCGHGMILHGCVNNVGYCSEGNGEWCNCDVKGLTYEEEIKALD
Ga0208678_10954151	3300027233	Estuarine	KKCSHGMIMHGCVDGVGYCMEGNGVWCDCTVKGKTYEEEVELLKHEM
Ga0208445_10343562	3300027245	Estuarine	MNKLVCKKCSHGMIMHGCVDGVGYCMEGNGVWCDCTVKGKTYEEEVELLKHEM
Ga0209709_101135283	3300027779	Marine	MDMVCKKCDHGMIMHGCVDGIGYCMEGNGVWCDCKEKGKTYEEELINNNYV
Ga0209091_100301191	3300027801	Marine	KHSRKFWIRIIMDMVCKKCDHGMIMHGCVDGIGYCMEGNGVWCDCKEKGKTYEEELINNNYV
Ga0209035_101543323	3300027827	Marine	MSFEVCKKCDHGMGMHGCVENVGYCMDGNGDWCNCTEKGLTYEEELKLLR
Ga0209089_100426465	3300027838	Marine	MFSLSPKENEMSYLTCKKCDHGMGMHGCVEGIGYCMEGNGDWCNCTEKGLTYDEEVKLLK
Ga0209403_105156501	3300027839	Marine	MSYLTCKKCDHGMGMHGCVEGIGYCMEGNGDWCNCTEKGLTYDEEVALLK
Ga0209402_101200653	3300027847	Marine	MSYLTCKKCDHGMGMHGCVEGIGYCMEGNGDWCNCTEKGLTYEQELKLLK
(restricted) Ga0233415_101019501	3300027861	Seawater	MSRSWNLIMGKTVCSKCDHGMIMHGCVDSVGYCMEGQGDWCKCTVKGLTYEQELE
Ga0209404_1000294014	3300027906	Marine	MTVCSKCDHGMILHGCVDGVGYCMEGNGDWCKCTVKGKTYEEEIESIKHDS
Ga0209404_101266311	3300027906	Marine	MSTCSKCGHGMILHGCVDGVGYCMEGNGDWCDCTEKGKTYEEEISSIEHERTMS
(restricted) Ga0233414_101993643	3300028045	Seawater	SKENEMSYSTCKKCDHGMGMHGCVEGIGYCMDGNGDWCNCTEKGLTYDEEVALLR
Ga0257121_12098932	3300028198	Marine	MICKKCGHGMILHGCVNNVGYCMEGNGDWCNCDVKGLTYDEE
Ga0256397_10001275	3300028436	Seawater	MYDVCTKCDHGMILHGSVDGVGYCMEGNGNWCECTVEGLTYEQEIESLK
Ga0308024_11049861	3300031140	Marine	MNTVCKKCDHGMIMHGCVDGIGYCMEGQGNWCKCKEKGKTYEEELSEL
Ga0308024_11538102	3300031140	Marine	MTKTVCSRCNHGMIMHGCVDGVGYCMEGQGDWCKCTVKGKTYEQEIEMLKNE
Ga0308024_11589932	3300031140	Marine	FPLSPKENEMITLCKKCNHGMLMHGSVDDVGYCMDGNGEWCDCTEQGLTYDEEIELLR
Ga0308021_100313284	3300031141	Marine	MNKLVCKKCSHGMLLHGCVDGVGYCMEGNGVWCDCTVKGKTYEEEVELLKHEM
Ga0308021_100436043	3300031141	Marine	MNTVCKKCDHGMIMHGCVDGIGYCMEGQGNWCKCKEKGKTYEEELSELKR
Ga0308021_100537773	3300031141	Marine	MFPLSPKENEMITLCKKCNHGMLMHGSVDDVGYCMDGNGEWCDCTEQGLTYDEEIELLR
Ga0308023_10945042	3300031167	Marine	MTVCNKCGHGMIMHGCVDGVGYCMEGQGDWCKCTVKGKTYEQEIEMLKNEGI
Ga0308010_11536702	3300031510	Marine	MNTVCKKCDHGMIMHGCVDGIGYCMEGQGNWCKCKEKGKTYEEELSELKRXLDYVTSV
Ga0308010_11620592	3300031510	Marine	MTFEVCKECSHGMLLHGNEHGEGYCSEGNGDWCDCKVKGLSYD
Ga0307379_106065972	3300031565	Soil	VFSLSPKENEMSYSTCKKCDHGMGMHGCVEGIGYCMEGNGDWCNCTEKGLTYDEELKLLK
Ga0308019_100047449	3300031598	Marine	MFSLSPKENEMITLCKKCNHGMLMHGSVDDVGYCMDGNGEWCNCTEQGLTYDEEVELLR
Ga0308019_100139232	3300031598	Marine	MNKLVCKKCSHGMLLHGCVDGVGYCMEGNGVWCDCTVKGQDL
Ga0308009_100195427	3300031612	Marine	MTVCNKCGHGMIMHGCVDGVGYCMEGQGDWCKCTVKGKTYEQEIEMLKNEGII
Ga0302135_103029243	3300031625	Marine	MARMTCNKCGHGMIMHGCVGSIGYCMDGNGEWCNCTVKGLTYDQEVELLQ
Ga0308017_10270551	3300031689	Marine	MKGNTVCTKCGHGMIMHGCVDSVGYCMEGQGDWCMCTVKGLTYEEELESNA
Ga0308013_103541372	3300031721	Marine	LLMTKTVCSKCDHGMIMHGCVDGVGYCMEGQGDWCKCTVKGKTYEQEIEMLKNE
Ga0315331_106979321	3300031774	Seawater	MTVCNKCGHGMILHGCVDGVGYCMEGNGDWCECTEKGKTYEEELSDIQY
Ga0314858_016209_530_682	3300033742	Sea-Ice Brine	MSYSTCKKCDHGMGMHGCVEGRGYCMEGNGDWCDCTEKGLTYDEEVALLR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters