Scaffold SRS064276_LANL_scaffold_48678

Overview

Basic Information

• Taxon OID: 7000000740
• Scaffold ID: SRS064276_LANL_scaffold_48678
• Source Dataset Name: Human stool microbial communities from NIH, USA - visit 2, subject 763840445
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6461
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Hungatella → Hungatella hathewayi (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: National Institutes of Health, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F074899	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
SRS064276_LANL_scaffold_48678__gene_101625	F074899	N/A	MSGRKQWNKQAATSSFLDKKPPESLILQGLEGSTTLGKDEVGS