7000000740: Human stool microbial communities from NIH, USA - visit 2, subject 763840445

Overview

Basic Information

• IMG/M Taxon OID: 7000000740
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053334 | Ga0030600
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 763840445
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 185734961
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Hungatella → Hungatella hathewayi	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029444	Metagenome	188	Y
F067720	Metagenome	125	Y
F074899	Metagenome / Metatranscriptome	119	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2456801	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	620
SRS064276_LANL_scaffold_48678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Hungatella → Hungatella hathewayi	6461
SRS064276_LANL_scaffold_54962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4271

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2456801	C2456801__gene_235793	F067720	MASTTYRHLGDVTEMYAAQEQFRDLTKTYHLGNVPVMVRNAGQLPQPFWLGAACGGG
SRS064276_LANL_scaffold_48678	SRS064276_LANL_scaffold_48678__gene_101625	F074899	MSGRKQWNKQAATSSFLDKKPPESLILQGLEGSTTLGKDEVGS
SRS064276_LANL_scaffold_54962	SRS064276_LANL_scaffold_54962__gene_115645	F029444	MEVSEQLTGFELEYLMSWTVSNLQRPFREDFSLQKSGIIAEKESQIFGRRFVGFDS