NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS024355_LANL_scaffold_53567

Scaffold SRS024355_LANL_scaffold_53567


Overview

Basic Information
Taxon OID7000000713 Open in IMG/M
Scaffold IDSRS024355_LANL_scaffold_53567 Open in IMG/M
Source Dataset NameHuman supragingival plaque microbial communities from NIH, USA - visit 2, subject 159551223
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8742
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameNational Institutes of Health, USA
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F105377Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
SRS024355_LANL_scaffold_53567__gene_62810F105377GAGGMSDFDKLPLLTPEEAFERAWEGGGSAHPVFDRGYRVQGLNAWKAIETLLCRNDVRDITVASFGLKRFEEILDAIAMLHERGWRLWQTSANVYVDGEKRPVQAIRAHYRGI

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