7000000713: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159551223

Overview

Basic Information

• IMG/M Taxon OID: 7000000713
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053298 | Ga0031087
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159551223
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 136797959
• Sequencing Scaffolds: 14
• Novel Protein Genes: 15
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10	1
All Organisms → Viruses	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F043991	Metagenome	155	N
F049707	Metagenome	146	N
F051211	Metagenome	144	N
F051212	Metagenome	144	N
F051214	Metagenome	144	N
F058221	Metagenome	135	N
F063778	Metagenome	129	Y
F074985	Metagenome	119	N
F081456	Metagenome	114	N
F092231	Metagenome	107	Y
F095630	Metagenome	105	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C4221178	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	611
C4239364	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	689
C4273273	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	961
C4300903	All Organisms → Viruses → Predicted Viral	1809
SRS024355_LANL_scaffold_100734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	634
SRS024355_LANL_scaffold_104853	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	11259
SRS024355_LANL_scaffold_19920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	636
SRS024355_LANL_scaffold_32523	All Organisms → cellular organisms → Bacteria	39800
SRS024355_LANL_scaffold_37642	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10	1616
SRS024355_LANL_scaffold_4629	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	39839
SRS024355_LANL_scaffold_53567	All Organisms → Viruses	8742
SRS024355_LANL_scaffold_53888	All Organisms → Viruses	8174
SRS024355_LANL_scaffold_63229	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1569
SRS024355_LANL_scaffold_63834	All Organisms → Viruses → Predicted Viral	3058

Sequences

Scaffold ID	Protein ID	Family	Sequence
C4221178	C4221178__gene_229916	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTSGKNVHLVITKDSIIYRLTEVVTDKKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTDIQNNKTWDYITKQIIDIKFSQLYNHLNLEK
C4239364	C4239364__gene_234854	F058221	MKNKMGKIKNFQDLKNQKEELKTEIKEIESVLSFENPRKTLGVITNGVTEKYLGGMMDSGLVQNASFLANKFLLPSLEAGSAKLLTNALLKRVRPSMKKTLIGLGVAVLTPIIIMQIKKRLDNFQQRETVKSLSKLI
C4273273	C4273273__gene_244096	F018385	ISGTETMMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNWVHWTAYMFTHDGLNELVFMPGSSRKTISRLYHEEVK
C4300903	C4300903__gene_251834	F074985	MMELTDGGWYKTPLIIKGEDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRQLYDVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKVIHMGSTKRFNIEQFDQLWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDPTTGEQKYLMDHIKAMHID
SRS024355_LANL_scaffold_100734	SRS024355_LANL_scaffold_100734__gene_127356	F092231	MIIFPPQDFITWTNTLTQFPWPIQVNDFAPYAEKLGWKPTSLPDEFGVCPDKDDEITILSSDRDGNVRNLFLYMASNEAEDDEGAAEMNDHFVSCVAVGRKAWGEPFLLEAGDGPGVTWRFPGDMFSQVAGGFTAVLFNFFTPEGRRQFL
SRS024355_LANL_scaffold_104853	SRS024355_LANL_scaffold_104853__gene_133684	F095630	MYSSLYKISKDNGLLAHVYEHLLAQYVLKYLQDRGFFISSDIILTAKTYGDTCYMDAELHNPAAPNVYNEALRAFDKHAIPEKAVRRAVSECGIEMNRAVLELKQDELMSNLSRMQSSDWRQQSEMTYRKSYDKSSVDTLFCVPYLKYGKKSNKLFPECVLEYSVDEEHIKSPIDQALTAIVVQTVALNFLVAVRENHIVYDRGDQWSEASLSVGYRIFLGLAKEDKQITSQLKHEFTAYIQYLLKSPFCSNLQKALIRCSCNLEQVLLGRSTLNNILGGCVIGGCGWLEMADDARIKQMIAAIQLDVYDI
SRS024355_LANL_scaffold_19920	SRS024355_LANL_scaffold_19920__gene_22025	F063778	SEEAKQELLQKLQDALGLVKNADTSAHDVAAITHSAADGHQLTEVMLQQMTTARGYLKACVDQIEYAISNIEAIPLDPPPDD
SRS024355_LANL_scaffold_32523	SRS024355_LANL_scaffold_32523__gene_36393	F051211	MRVKKAIRIFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHTLNLRRQRHERHVILRVFIDGSTYNIDPSIDIGLAPTLPIAHWDSTSNTATMVSLKHLRIYRPHSLHERILSRLRRNLFRDNPKEFYTEIDKWLADTRAHQSP
SRS024355_LANL_scaffold_37642	SRS024355_LANL_scaffold_37642__gene_42743	F081456	LGYRLFLEKGAHMFEEPPIYYILISLIFLIVFGAISFATWLVWLTSITFFAKLVVTAIGFLLAAMTVILYTIS
SRS024355_LANL_scaffold_4629	SRS024355_LANL_scaffold_4629__gene_4089	F049707	VVSEYKSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTIWYFRLVDGGIMTFSSREWEQRDDVNHLTTIWMRPSLYDIERKEN
SRS024355_LANL_scaffold_53567	SRS024355_LANL_scaffold_53567__gene_62810	F105377	MSDFDKLPLLTPEEAFERAWEGGGSAHPVFDRGYRVQGLNAWKAIETLLCRNDVRDITVASFGLKRFEEILDAIAMLHERGWRLWQTSANVYVDGEKRPVQAIRAHYRGI
SRS024355_LANL_scaffold_53888	SRS024355_LANL_scaffold_53888__gene_63212	F105377	VRDFDRLPLLTPEEAFERAREMGWNRPLFDLDYRVRGLGDWKTLEALLRQYDVEDAVIASFGLKSFEEILDVIAMLHERGWHIWQTAAKVYVGGELKDVQAIRAHYHGD
SRS024355_LANL_scaffold_63229	SRS024355_LANL_scaffold_63229__gene_75613	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNEVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWI
SRS024355_LANL_scaffold_63229	SRS024355_LANL_scaffold_63229__gene_75614	F043991	MSKKNPSVIDYFDLNGDLNEEAYEFEDVKLEAYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGSPSNVHPDFRA
SRS024355_LANL_scaffold_63834	SRS024355_LANL_scaffold_63834__gene_76436	F027205	VSADDILKAVKKSEEFERKALTEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHIEKRTANNSYRFVVDVSQVRNRDLADEIEKDLFAFMDYLLDEYDIPRRIKRSTK