Scaffold SRS019980_Baylor_scaffold_3344

Overview

Basic Information

• Taxon OID: 7000000692
• Scaffold ID: SRS019980_Baylor_scaffold_3344
• Source Dataset Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160643649
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42589
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (83.02%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: National Institutes of Health, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F101360	Metagenome	102	N
F103434	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
SRS019980_Baylor_scaffold_3344__gene_3410	F103434	GAGG	VVGFRPRRGRYLENGPHVVEVTLAVVKEGRTGRRFERGETFTIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESK
SRS019980_Baylor_scaffold_3344__gene_3436	F101360	GGA	VSKETALRRAAIAAHIAKVASQEKKKALKELEEHMAPGDTSKPQIDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAAAALDGFIKQTGEVPDGVEVVQGDPRISVRISTTQEEAIRDLISTGDISILEIESGDA