7000000692: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160643649

Overview

Basic Information

• IMG/M Taxon OID: 7000000692
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053269 | Ga0031067
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160643649
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 120355757
• Sequencing Scaffolds: 17
• Novel Protein Genes: 18
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	5
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga sputigena	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	3
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F043235	Metagenome	156	N
F047127	Metagenome	150	N
F053092	Metagenome	141	N
F055792	Metagenome	138	N
F059076	Metagenome	134	N
F061925	Metagenome	131	N
F064818	Metagenome	128	N
F071329	Metagenome	122	N
F080165	Metagenome	115	N
F084362	Metagenome	112	N
F085821	Metagenome	111	N
F089056	Metagenome	109	N
F097490	Metagenome	104	N
F101359	Metagenome	102	N
F101360	Metagenome	102	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2963404	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	558
C3003950	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga sputigena	751
C3005940	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	766
C3013446	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	827
C3027718	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	987
SRS019980_Baylor_scaffold_15837	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1016
SRS019980_Baylor_scaffold_18220	All Organisms → cellular organisms → Bacteria	91718
SRS019980_Baylor_scaffold_19116	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	8101
SRS019980_Baylor_scaffold_2085	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	849
SRS019980_Baylor_scaffold_30468	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1296
SRS019980_Baylor_scaffold_3344	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	42589
SRS019980_Baylor_scaffold_41336	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2154
SRS019980_Baylor_scaffold_42950	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1148
SRS019980_Baylor_scaffold_44988	All Organisms → cellular organisms → Bacteria	1185
SRS019980_Baylor_scaffold_57031	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis	11331
SRS019980_Baylor_scaffold_6353	All Organisms → cellular organisms → Bacteria	1041
SRS019980_Baylor_scaffold_7095	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	28179

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2963404	C2963404__gene_161781	F097490	MNKKMNVFCKIILPLLCIISCSKRKEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPVVSAMTDHGLHHITSEMIKGQMHHKKLDSIVCSVYIWDDICTEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNLFSNSKENKKMYFMLKKKL
C3003950	C3003950__gene_180694	F085821	IEKGFKFTRQPDVQKFKLLTADFFVAGNMPAVQLCIDYLVAQGYPTAENKKQFLNWIFMEPVYYLKYFISDTSTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYIDAWNEASVNKTLSIIRSGETIASGKEDVVELAESLNDEYELNISLLDEYCRALLYTAETTESQQELVAETQSHIALLKDLYKKVNKIK
C3005940	C3005940__gene_181672	F071329	PVAKIIISGLSSIGAGMIASKLTKPIVSNANGIAKILLWFGSVGTGVAASAIVAREVEKQFDETVKAVKEARDHVEIED
C3013446	C3013446__gene_185368	F059076	MTNKILLLGLLLGGVSINAQVINETKAAGKTGQKVGINTNIPTRTLTIKNSTANDGKPLIRLVDAPIYSKNVKSAMDADLGGNTANSTNYTDYRPLVVDKVGDVYQGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVTIMNAIFKMPDPGAGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITL
C3027718	C3027718__gene_192589	F080165	MKNKKFLLAILLSLTACNNKTKTISTLDLEKTIIDYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGSRYIIYGDSLYIPNHYNIYEEDSLKYTFTRYILR
SRS019980_Baylor_scaffold_15837	SRS019980_Baylor_scaffold_15837__gene_17165	F047127	IISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDKKMNKRVFRQIPELKKNGKLFEIMLQGEVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK
SRS019980_Baylor_scaffold_18220	SRS019980_Baylor_scaffold_18220__gene_19839	F084362	MSLMNCTFTVRWSDEKNKQHAKTYATESDARRAKKWLLEHGIRDVDIAVKINNKPAGSLKDGDKSSEAEQKGFWWQE
SRS019980_Baylor_scaffold_19116	SRS019980_Baylor_scaffold_19116__gene_20918	F053092	MQSDQGLILCLTHALLVLGALILEPAEMEDTMDDHTVQFFGVLVAKELGIATHRIKADEHVPRDHIPLTLVEGDDISIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK
SRS019980_Baylor_scaffold_2085	SRS019980_Baylor_scaffold_2085__gene_2132	F030786	VQMKRTKIHKVVFQMLVVMIVTSSLQLLLKNGSATKGGNAMGTKKANKISFADITDGDKSKVVAIKVKYFDDEGVDKIFENNNNKILNTINSQHISYDSQSAEYSKPQLFLLYQSLKVDC
SRS019980_Baylor_scaffold_30468	SRS019980_Baylor_scaffold_30468__gene_34083	F101359	MKKFLSKRSILVGALALVLGFIISSCSRDKDDDAIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRSGISENISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQKQSFTDSYKETVK
SRS019980_Baylor_scaffold_3344	SRS019980_Baylor_scaffold_3344__gene_3410	F103434	VVGFRPRRGRYLENGPHVVEVTLAVVKEGRTGRRFERGETFTIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPESLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESK
SRS019980_Baylor_scaffold_3344	SRS019980_Baylor_scaffold_3344__gene_3436	F101360	VSKETALRRAAIAAHIAKVASQEKKKALKELEEHMAPGDTSKPQIDGLQVGTVSVSAPQPRYQVVDEKALVAWLEWNKPDAVHKVPAPWFVAAAALDGFIKQTGEVPDGVEVVQGDPRISVRISTTQEEAIRDLISTGDISILEIESGDA
SRS019980_Baylor_scaffold_41336	SRS019980_Baylor_scaffold_41336__gene_47570	F064818	MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMRFDYSQNYKGFYLQLASYNRDVGDFFEQEMGNAFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGKKDYQQTAKQRILQRK
SRS019980_Baylor_scaffold_42950	SRS019980_Baylor_scaffold_42950__gene_49720	F059076	MTNRILLLGLLLGGASINAQTINETNAAGKTGQKVGINTTIPTRTLTIKNSTPNDGKPVLRLVDAPIYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYKGLPINNMSILTLTIDKVNGDYIRKFDTGIDYNKYAVAIMSYTFKMPAPASGGIVMLRGGSNTPSVAHGGNKYGVTTAPATVLLTQNGSNWGIYADYPNIGSYEFTSGSTAIGNLVDGTWVITLLVGKRDAVNFTEIKFDQNGQAEGIGPSNTTYTTQLQNFLKKLE
SRS019980_Baylor_scaffold_44988	SRS019980_Baylor_scaffold_44988__gene_52451	F089056	KNHAFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPNRRFKDKEKIVFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ
SRS019980_Baylor_scaffold_57031	SRS019980_Baylor_scaffold_57031__gene_71788	F043235	MDEVVPSDEGHLLIDLCDDDPRRLCSGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH
SRS019980_Baylor_scaffold_6353	SRS019980_Baylor_scaffold_6353__gene_6635	F061925	MSWEYSINLDSEESLSSVVTDLKICELFSSSTTDYIDWKNPKSIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTDEEVTLEHIFRSVI
SRS019980_Baylor_scaffold_7095	SRS019980_Baylor_scaffold_7095__gene_7430	F055792	MEIASQALDSTSAVTHRILLLTTQLSESLLASFGAEDGVIAEAMVTRALESNLSIDSTLEEVGSVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSVKSLDLESRIIGKAIEPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDL