Scaffold SRS049389_WUGC_scaffold_43348

Overview

Basic Information

• Taxon OID: 7000000677
• Scaffold ID: SRS049389_WUGC_scaffold_43348
• Source Dataset Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765701615
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1877
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: National Institutes of Health, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040685	Metagenome	161	N
F051212	Metagenome	144	N

Sequences

Protein ID	Family	RBS	Sequence
SRS049389_WUGC_scaffold_43348__gene_53310	F051212	N/A	MKKFFFIFVLYWLHSCNGTEKAMTTSPDTQKTNISEKQNTEKIERIIYSETGGDTGGKNVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTIKIIIKTDKKEYSKTDIQANKTWDYITKQIIDIKYSQLYNHLNLEK
SRS049389_WUGC_scaffold_43348__gene_53311	F040685	N/A	MKKLLFKLFFALAFVSISLHGQEKIQQVEVHIFGGMALYSSRYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWEAFTKKINLDKFKKLRDGPSQQTFDGQDEVIIIKTDKKTYRKMNASGNDHDRKVWYDLLQIIAKEFGKKSIYE