7000000677: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765701615

Overview

Basic Information

• IMG/M Taxon OID: 7000000677
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053253 | Ga0031289
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765701615
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 121268177
• Sequencing Scaffolds: 20
• Novel Protein Genes: 21
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria	3
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033081	Metagenome	178	Y
F040685	Metagenome	161	N
F043235	Metagenome	156	N
F043990	Metagenome	155	N
F045567	Metagenome	152	N
F047127	Metagenome	150	N
F047508	Metagenome	149	N
F051211	Metagenome	144	N
F051212	Metagenome	144	N
F051988	Metagenome / Metatranscriptome	143	Y
F054110	Metagenome	140	N
F054111	Metagenome	140	N
F057446	Metagenome	136	N
F061926	Metagenome	131	N
F071327	Metagenome	122	N
F071328	Metagenome	122	N
F080164	Metagenome	115	N
F089056	Metagenome	109	N
F090516	Metagenome	108	N
F092230	Metagenome	107	N
F103432	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C4624980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	545
C4637676	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	585
C4659678	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	671
C4678210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	778
C4711597	All Organisms → Viruses → Predicted Viral	1158
C4722012	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1420
C4731138	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1834
SRS049389_WUGC_scaffold_14563	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	11676
SRS049389_WUGC_scaffold_14926	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1189
SRS049389_WUGC_scaffold_18228	All Organisms → cellular organisms → Bacteria	1734
SRS049389_WUGC_scaffold_19364	Not Available	583
SRS049389_WUGC_scaffold_25524	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1047
SRS049389_WUGC_scaffold_32951	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1445
SRS049389_WUGC_scaffold_35937	Not Available	976
SRS049389_WUGC_scaffold_40970	All Organisms → cellular organisms → Bacteria	978
SRS049389_WUGC_scaffold_42379	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	535
SRS049389_WUGC_scaffold_43348	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1877
SRS049389_WUGC_scaffold_43854	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	4503
SRS049389_WUGC_scaffold_44069	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1357
SRS049389_WUGC_scaffold_9417	All Organisms → cellular organisms → Bacteria	1510

Sequences

Scaffold ID	Protein ID	Family	Sequence
C4624980	C4624980__gene_147566	F054110	RWFSYRMWCINLNWYCVVLDVNYQPTIKKLLKALQMNGRRYVVDVRQSWSKFDKPCKVYIVSRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKAYKGGE
C4637676	C4637676__gene_154055	F051211	LPIMRVKKAIKVFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDEFAYDVDPSIDIGLTPMLPMACWDGKSSTTTMAPLRRLRVYRPHSLHERILSQLRRKIFRSNPESFYTAIDIWLATIRVS
C4659678	C4659678__gene_165467	F033081	MAWLLRRVMPQDPRPVFVWPRLVAAIGNVGYFSRRGFSVLAVGLIIVTIATIKILLFVPGLNQSVVSLLTRGLETFLPTGWATIAAWVVGTTGVFLIGSFTSSYTPSQRLLYSLEATGCGVYDTLLLLALIEEQAFRSGSEKWSWHGRARASVCFGLIHVTNIWYSFAAGIALSATGFGFLLVYLWYYRKYR
C4678210	C4678210__gene_175612	F092230	MRQAHKRTVDKLKTHLLKVFLPLFIVCIILVAFFRQIGCGSEGGYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYINMAYGEGSVEVSDSTSTGEVQNTVEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMTIGYYSYLKPETVYGFYCKLRRKEKYPSDVNLVKRIGFLVIILPPC
C4711597	C4711597__gene_195775	F051988	IAKMQQIALNTVPDMLVAEYNIAALGAMKKATGSDMATFLFTKLRELYTKTINFKLVSTLEKGYAGNVMDDLDLSNAPASLASKFMDYRSRVDLFDAYLINVESALATKAVKGVTTTAYIAGNQAANQFQKGGVIGKFERNTKMTYISDLLGWYDGVPVLRSTDIQEKAGEGTFYAIHKTQDGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGVRYLAPELVQKVSFKFGF
C4722012	C4722012__gene_203047	F061926	MMIKTAKHIKTFLALVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPLTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS
C4731138	C4731138__gene_210163	F047127	TKANLYPHVLSKNKFNPLVFENGFKVGERRQAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK
SRS049389_WUGC_scaffold_14563	SRS049389_WUGC_scaffold_14563__gene_14667	F103432	MKLINSLFSFSLLLALSGLFCTTACQDDAEPTQRAGLISTDSLIHAAKVYDGKAFEHLVSTTAAGLRVREPRRVVPMLPRQLHVTMEGKTLIRRHSLPSVSAYSFQVVAVGDTIYRQKESDAQFNADLDALFHESIGIAPRLFGVRELSVLGIDSRGKTRDLGNYSYPLLRGVRIYMAFRSREGVFHEHYEAARVDTFCVKDDWLLKTKAEPSLYVPSFRLLVWDQPADDCTKLRFTLTLVDGRSLVTEVPLY
SRS049389_WUGC_scaffold_14926	SRS049389_WUGC_scaffold_14926__gene_15073	F057446	MNSISFGKTTITSYPEYFEITDNKKTSKLLYLSASLVFIAIYLFDLYQNDFDFGKVAHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYGDKKRKIDGFSQDEAEQII
SRS049389_WUGC_scaffold_18228	SRS049389_WUGC_scaffold_18228__gene_18702	F047508	LGTDIVVTRAVEAIATDAVLVIEFVGEPIHIGMLGHRLVEGRVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYDLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFENVEDNLYAACVVRNVKVALNLLAFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELIPSSP
SRS049389_WUGC_scaffold_19364	SRS049389_WUGC_scaffold_19364__gene_19886	F071328	EEYERNPLLIERMKWEFILEGEYIVEFVKLCKHLVLERTIDPKKHQAAAIYLRYSSQLLLKKRRAIRRLGIEKEYVSAILRQYGIHYREYGDNEHRVFFLDTGINIYFSKHHQSSIYIIQRIEFSNEEYRSFILKVLPVKKSEW
SRS049389_WUGC_scaffold_25524	SRS049389_WUGC_scaffold_25524__gene_26832	F043235	VDEFGTQLTDALLDRPDRSKRELHQWAVNGDDIVQLRYMDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVREFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYYRSHGFKGGRSMASNVLLPGSAH
SRS049389_WUGC_scaffold_32951	SRS049389_WUGC_scaffold_32951__gene_35960	F043990	MIKKLGIIFIFGVIVLGIVVYANHKIERSAIEREFGVNMSNMNIDEKYRKEEWAPNGDGEETIILTYDKLDSSFTKLNKLPIKEGLPPNGIPKQFLNTANGYYKYVVDENDDRNFDILIVDTTRKEICIYYQIL
SRS049389_WUGC_scaffold_35937	SRS049389_WUGC_scaffold_35937__gene_39922	F080164	MVGLALCAAPQVTLRERALAFPLITEKDPSEIYEPYAWRLPVVPLSLDNREIFNFVKYPTLPSLFGGILTVRVLVVGDTVAVHQDLMDDFAKRCRTTLGLGVRTAPKLFGIKGMHVYGVQKDGSRQAVDEQVTLHLPGFEKAEKPFLYKGQAGRLVLCEYYSSHRGDLLLDAANARPEIFGELNPVVDFHFPVELRRAYAWLLLEIELEDGTKLSTSLQ
SRS049389_WUGC_scaffold_40970	SRS049389_WUGC_scaffold_40970__gene_48277	F054111	MNKSLESITHEEFLKLMERLKNLQEFTFLEYTMAPEADIFYFNFMEKTVKIKWDLDYGLFLETEALSTSDRDLFLNILDKEFLFLI
SRS049389_WUGC_scaffold_42379	SRS049389_WUGC_scaffold_42379__gene_51116	F089056	MFLKTQKMNKKMNVFCKIILPLLCIISCSKRKEADNTMVLEKNHAFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPNRRFKDKEEIVFMYYINSCCDNGQLLEECDVSFISITFTNKNKILFGKGIQ
SRS049389_WUGC_scaffold_43348	SRS049389_WUGC_scaffold_43348__gene_53310	F051212	MKKFFFIFVLYWLHSCNGTEKAMTTSPDTQKTNISEKQNTEKIERIIYSETGGDTGGKNVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSEELIMDLPTIKIIIKTDKKEYSKTDIQANKTWDYITKQIIDIKYSQLYNHLNLEK
SRS049389_WUGC_scaffold_43348	SRS049389_WUGC_scaffold_43348__gene_53311	F040685	MKKLLFKLFFALAFVSISLHGQEKIQQVEVHIFGGMALYSSRYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWEAFTKKINLDKFKKLRDGPSQQTFDGQDEVIIIKTDKKTYRKMNASGNDHDRKVWYDLLQIIAKEFGKKSIYE
SRS049389_WUGC_scaffold_43854	SRS049389_WUGC_scaffold_43854__gene_54671	F071327	MEDLFNRVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGRISDVLRKTSFFSMILLYIQGILGVFLGIYSPEFSEASGFSSYFKLFEYGIIILTCAGMITYVYMFLKSNQILTLKVLIIALVAALLFEYAYPWRIIFG
SRS049389_WUGC_scaffold_44069	SRS049389_WUGC_scaffold_44069__gene_55358	F090516	MKSNLSLKLFLAFERYFIENDEVISLDKSSEFTDVIVGIGFLPQDMSENTDFKKKTLEKYGFSSSTALADDFRKRVLNIDEPIPENFEKDGIGYVYTVISGYDVFYNRMYMFGIHCFNGDFNVTYYDLDNDAGTGDYYEEHELYSQAKGYRWLDPESDYYEDVLAWEALNKLATDIYFHLEDKLDVKIDIKPIPEEEKVVPTQEHLAKFLAFCGVEQDVIDENKERLLKALEEYTPDEYEGVSDAMAEMMEYSHKIQRAEPVIEIIREYGVCRFSDWKFYAEELEEYILDLADFSDWKWEYPADTYSADLFPYMRKQLSLYHLWLCHLDEGADAYLFLLFSEKDMPEIMKLARILDLPLKAYFK
SRS049389_WUGC_scaffold_9417	SRS049389_WUGC_scaffold_9417__gene_9416	F045567	MVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDRIDTIDTETCGLVVEVRATINEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR