NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS017025_Baylor_scaffold_1586

Scaffold SRS017025_Baylor_scaffold_1586


Overview

Basic Information
Taxon OID7000000673 Open in IMG/M
Scaffold IDSRS017025_Baylor_scaffold_1586 Open in IMG/M
Source Dataset NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 159490532
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)604
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameNational Institutes of Health, USA
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F061925Metagenome131N

Sequences

Protein IDFamilyRBSSequence
SRS017025_Baylor_scaffold_1586__gene_1667F061925AGGAMSWEYSLNLDSEESASLVVMDLKFCKLFSSSTTDYIDWKNPKSIDAIPYDARFYTDKKKTIYITINSFSKNIFSALKLILAKYDYHLTDCDTDEEVTLEHIFRSVI

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