7000000673: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159490532

Overview

Basic Information

• IMG/M Taxon OID: 7000000673
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053249 | Ga0031039
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 159490532
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 62028994
• Sequencing Scaffolds: 13
• Novel Protein Genes: 13
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F043991	Metagenome	155	N
F049707	Metagenome	146	N
F057446	Metagenome	136	N
F059076	Metagenome	134	N
F061925	Metagenome	131	N
F064818	Metagenome	128	N
F064819	Metagenome	128	N
F089056	Metagenome	109	N
F097525	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C1716466	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Apibacter → Apibacter adventoris	657
C1735840	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	934
C1740525	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1056
C1748522	All Organisms → cellular organisms → Bacteria	1403
C1751230	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1605
C1751278	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1608
SRS017025_Baylor_scaffold_1586	All Organisms → cellular organisms → Bacteria	604
SRS017025_Baylor_scaffold_22347	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	561
SRS017025_Baylor_scaffold_30760	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1845
SRS017025_Baylor_scaffold_34751	All Organisms → cellular organisms → Bacteria	43578
SRS017025_Baylor_scaffold_38552	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	914
SRS017025_Baylor_scaffold_40198	All Organisms → Viruses → Predicted Viral	1581
SRS017025_Baylor_scaffold_40780	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1460

Sequences

Scaffold ID	Protein ID	Family	Sequence
C1716466	C1716466__gene_92049	F089056	KIILPLLCIISCSKRKEADNTKTLEKNHTFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSVLLKEYLGTPNRRFKDKEEIVFMYYINSCCDNGQLLEECDVSFIAITFTNKNEILFRKGIQ
C1735840	C1735840__gene_100218	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKVRISTETMVSEENLDIERSDLEDLTRDLKDLCECKIRKFFFQNIDEKIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIATFSKEISQELKKI
C1740525	C1740525__gene_102424	F064818	NKSSYTEMRFDYSQNYKGFYLQLASYSRDVGDFFEQEMGNAFLKMLEDESKEFRNLFFAQNSFQLSHYYYGFPIMTNDDTGHLYPEMGTTIFNDILRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKNLLPLNDERVQGLFEYDNMVTKNECKLFSPFGLIFGKKDYQQAAKQRILQRK
C1748522	C1748522__gene_106284	F061925	SQTNIRNNPMSWEYSFNLDSEESVSLVVMDLKNCELFSSSTTDYIDWKNPKSIDDIPYDARFYTDKKKTIYIAINSFSKNIFSALKSILAKQNYHLTDCDTDEEVTLEHIFRSVI
C1751230	C1751230__gene_107781	F030786	MLVVMIVTSSLQLLLKNGSATKGRNAMGAKKANKISFADITDGDKSKVVAIKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC
C1751278	C1751278__gene_107808	F030786	MKRTKIHKVVFQMLVVMIVTSSLQLLLKNGYTTKGRNAMGTKKISLADITDGDKSKVVAIKVKYLDDDGADKIFENNNNRILNTINSQRISFDSQSAEYSKPQLFLLYRSLRVDC
SRS017025_Baylor_scaffold_1586	SRS017025_Baylor_scaffold_1586__gene_1667	F061925	MSWEYSLNLDSEESASLVVMDLKFCKLFSSSTTDYIDWKNPKSIDAIPYDARFYTDKKKTIYITINSFSKNIFSALKLILAKYDYHLTDCDTDEEVTLEHIFRSVI
SRS017025_Baylor_scaffold_22347	SRS017025_Baylor_scaffold_22347__gene_25446	F057446	SISFGKTTITSYPEYFEIADNKKTNKLLYLSASLVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWTSIVIHYGDKKRKIDGFSQEEADQIIKFLMNNR
SRS017025_Baylor_scaffold_30760	SRS017025_Baylor_scaffold_30760__gene_36207	F059076	MTNKILLLGLLLGGISTNAQVINETKAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLLRLVDAPIYSKNVRSDMDADLGGNTATTTNYTDYRPLVVDKVGDVYQGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVAIMNAIFKMPDPGAGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQDFLQKLE
SRS017025_Baylor_scaffold_34751	SRS017025_Baylor_scaffold_34751__gene_42072	F049707	VVSEYRSPHNDGHDPYILIWEYGNDAKRVEFSERWATFGEDGWTIWHFRLVDGGVMSFSSREWEQRDDVNHLTTIHFQPKIQNNERN
SRS017025_Baylor_scaffold_38552	SRS017025_Baylor_scaffold_38552__gene_48530	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFFELLGLLEWFEQISANQEKPAEIGFIEPELAFEYQNKKLIVLLCYDIAPVSYGEEPYQLTFSLDDKTLAMIIKELGEAVTSFKKV
SRS017025_Baylor_scaffold_40198	SRS017025_Baylor_scaffold_40198__gene_52051	F043991	MSKKNPSAVDYFDLNGDLNEEAYEFEDVKLEDYIDKRSNIKPSWIGKYSQQMHFDLDNGTEVSFYKGRNIIYADILFSKGIRTILFKCRQKKNLTRFISRVLELAQGEPSNIHPDFRA
SRS017025_Baylor_scaffold_40780	SRS017025_Baylor_scaffold_40780__gene_54000	F059076	MLSKFCQWQQLIQFIYSFFHFNFLLYLCHLKFTLMTHKILLLGLLLGGVSINAQTINETNAAGKTGQKVGINTTIPTRTLTIKNSTPNDGKPLLRLVDSPVYSKNVGSAMDADLGGNTATSTNYLDYRPLMVDAVGDVYKGLPINNMSILTLTISNVKGDWIANFDTGINYNKYAVAIMSATFKMPSPASGGIVMLRGGNNTPSVKHGPDNYGVTTAPATVLLQQHGANWAIYADYPNIGSYEFTSGSTAIGNLVNGTWVITLLVGKRDAVNFTELEFSQGGNNSGTGITNNTYKTGLENFLKKLE