Scaffold SRS022719_LANL_scaffold_14801

Overview

Basic Information

• Taxon OID: 7000000666
• Scaffold ID: SRS022719_LANL_scaffold_14801
• Source Dataset Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 370425937
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 228471
• Total Scaffold Genes: 224
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (14.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: National Institutes of Health, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063777	Metagenome	129	N
F097525	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
SRS022719_LANL_scaffold_14801__gene_28328	F097525	N/A	MQQKKIMFKIQNAYQKIIFSIHGNRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLDLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLTVLLCYDIAPVSYGEEPYQLTFSLDDKTLAMIIKELGEAVASFKKGIMMKKHEL
SRS022719_LANL_scaffold_14801__gene_28481	F063777	N/A	MKILNIKISALPPENNSFWMKLLLFLCIPFLFIFAILLLIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKENYLPDENSQEYKIFNDFCAKSNEYLDDGYIFYKLTDEKSATDLNGAIISEFQEDVGNYILLQNLILEDNQLKNQLISFNKNTGKITVLADIKDFFWLDFDSETKIINGYNNNEQIEIAISE