Scaffold SRS016037_WUGC_scaffold_28661

Overview

Basic Information

• Taxon OID: 7000000665
• Scaffold ID: SRS016037_WUGC_scaffold_28661
• Source Dataset Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764508039
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29918
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia → Candidatus Nanosynbacterales → Candidatus Nanosynbacteraceae → Candidatus Nanosynbacter → unclassified Candidatus Nanosynbacter → Candidatus Nanosynbacter sp. TM7-057 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: National Institutes of Health, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F103430	Metagenome	101	N
F105376	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
SRS016037_WUGC_scaffold_28661__gene_43547	F103430	AGGAG	MIEQITIKAFIGSNNKTKQLEVDKIISTVNANHEAFTLDYPVIGYWRSEAEETAVLYLSDEQQKVMNTLNELKEVLDQEAIAYQIENDLQLI
SRS016037_WUGC_scaffold_28661__gene_43550	F105376	AGAAG	MNEKPEVSAKEFGALEADVRHIKEGVDKHTITLERIENIAQANVTQSQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKTVTELQEEVQQTVRRK