NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS053630_LANL_scaffold_24006

Scaffold SRS053630_LANL_scaffold_24006


Overview

Basic Information
Taxon OID7000000664 Open in IMG/M
Scaffold IDSRS053630_LANL_scaffold_24006 Open in IMG/M
Source Dataset NameHuman supragingival plaque microbial communities from NIH, USA - visit 1, subject 508703490
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4306
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameNational Institutes of Health, USA
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F105377Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
SRS053630_LANL_scaffold_24006__gene_44241F105377GAGGMRDFNELPLLTPEEAFERAREMGWNRPLFDHGYRVRGLADWKAVETLLRQNDVSDITVASFGLKRFEEILDAFAMLHERGWHLWQTVANVYVGGELRTVPAIRAHYRGD

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