7000000664: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 508703490

Overview

Basic Information

• IMG/M Taxon OID: 7000000664
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053240 | Ga0031064
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 508703490
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 39159249
• Sequencing Scaffolds: 3
• Novel Protein Genes: 4
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036281	Metagenome	170	N
F074985	Metagenome	119	N
F101358	Metagenome	102	Y
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
SRS053630_LANL_scaffold_24006	All Organisms → Viruses	4306
SRS053630_LANL_scaffold_4028	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	14694
SRS053630_LANL_scaffold_7129	All Organisms → cellular organisms → Bacteria	244815

Sequences

Scaffold ID	Protein ID	Family	Sequence
SRS053630_LANL_scaffold_24006	SRS053630_LANL_scaffold_24006__gene_44241	F105377	MRDFNELPLLTPEEAFERAREMGWNRPLFDHGYRVRGLADWKAVETLLRQNDVSDITVASFGLKRFEEILDAFAMLHERGWHLWQTVANVYVGGELRTVPAIRAHYRGD
SRS053630_LANL_scaffold_4028	SRS053630_LANL_scaffold_4028__gene_6421	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWAAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERERDHWYTFRMSDAQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
SRS053630_LANL_scaffold_4028	SRS053630_LANL_scaffold_4028__gene_6422	F074985	MMELTDGGWYKTPRIIKGEDFLAHIHETYASGNAMYVEFKASEGEVRILEYQRLYEVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFSLEQFDQLWLDQTFQKLHPVIINHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID
SRS053630_LANL_scaffold_7129	SRS053630_LANL_scaffold_7129__gene_11449	F101358	MTEKHSASLPPRQEHLLTQPITTDGTPEKRTTHPDTHIIPKRQDVPRYQWNVLRSSGQLDEGWIDTEIIDENDVALVRMTKPVHRSNIDKLEKCVPLAVLQEQNIDFTNAYLQKAYGVMVEDGRLQPVADTTHATTSSQEQQTEILPAQGADTHEHLDGDSARRLVGSVAAKASDGEVDNSLLVRRALKR