Scaffold SRS016746_Baylor_scaffold

Basic Information
Taxon OID	7000000650 Open in IMG/M
Scaffold ID	SRS016746_Baylor_scaffold_4183 Open in IMG/M
Source Dataset Name	Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160421117
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

7000000650 Open in IMG/M

Scaffold ID

SRS016746_Baylor_scaffold_4183 Open in IMG/M

Source Dataset Name

Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160421117

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	39217
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (85.19%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

39217

Total Scaffold Genes

54 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

46 (85.19%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales

(Source: IMG/M)

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location Name	National Institutes of Health, USA
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

National Institutes of Health, USA

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

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Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F074985	Metagenome	119	N

Family

Sequences

Protein ID	Family	RBS	Sequence
SRS016746_Baylor_scaffold_4183__gene_3697	F074985	AGGAGG	MELTDGGWYKTPRIVKGEDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYEVDTENAVLFTINKCPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIINHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRIPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDDEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID
SRS016746_Baylor_scaffold_4183__gene_3698	F036281	AGGAG	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLISNGSVLFLAEERKTYNAKEYYDYWTAREGRPAPFFYESQQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDAQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
SRS016746_Baylor_scaffold_4183__gene_3699	F027205	AGGA	VASRLIVSADDILKAVKESEEFERKALNEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIIDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIKRSAK
SRS016746_Baylor_scaffold_4183__gene_3706	F018385	GGA	MMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNYVHWTTYMFTHDGLNELVFMPGSSRKTISRLYYEEVT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold SRS016746_Baylor_scaffold_4183

Overview

Ecosystem & Geography

Associated Families

Sequences