7000000650: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160421117

Overview

Basic Information

• IMG/M Taxon OID: 7000000650
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053226 | Ga0031038
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 160421117
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 112541914
• Sequencing Scaffolds: 11
• Novel Protein Genes: 15
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1
All Organisms → Viruses	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F043990	Metagenome	155	N
F043991	Metagenome	155	N
F047127	Metagenome	150	N
F051212	Metagenome	144	N
F059076	Metagenome	134	N
F074985	Metagenome	119	N
F080165	Metagenome	115	N
F081454	Metagenome	114	N
F085821	Metagenome	111	N
F101359	Metagenome	102	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
SRS016746_Baylor_scaffold_1161	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1867
SRS016746_Baylor_scaffold_16790	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	822
SRS016746_Baylor_scaffold_17457	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1391
SRS016746_Baylor_scaffold_21144	All Organisms → Viruses → Predicted Viral	3860
SRS016746_Baylor_scaffold_2870	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2567
SRS016746_Baylor_scaffold_28803	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1081
SRS016746_Baylor_scaffold_34924	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1841
SRS016746_Baylor_scaffold_4183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	39217
SRS016746_Baylor_scaffold_65737	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1247
SRS016746_Baylor_scaffold_75568	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	979
SRS016746_Baylor_scaffold_82366	All Organisms → Viruses	1239

Sequences

Scaffold ID	Protein ID	Family	Sequence
SRS016746_Baylor_scaffold_1161	SRS016746_Baylor_scaffold_1161__gene_1308	F051212	MKKFFFIFVLYWLHSCNGTEKAMATSPDTQKTSISEKQNAEKIERIIYSQTGGDTGGKNVHLVITKDSIIYHLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQIIDIKFSQLNNHLNLEK
SRS016746_Baylor_scaffold_16790	SRS016746_Baylor_scaffold_16790__gene_19092	F047127	SLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIREILEKYNSK
SRS016746_Baylor_scaffold_17457	SRS016746_Baylor_scaffold_17457__gene_19817	F101359	KQKKLIFKMKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSAANGSVTYRDANGNKRKIYLRSGMSENISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYTGQGITDSYKETVK
SRS016746_Baylor_scaffold_21144	SRS016746_Baylor_scaffold_21144__gene_24111	F105377	VRNFDKLPLLTPEEALERAWEEGGSDHPVFDRGYRVRGLNSWKAVETLLQQNDVRDITVASFGLKRFEEILDAIAMLHERGWHLWQTSANVYVDGEKRTVQAIRARYRVI
SRS016746_Baylor_scaffold_2870	SRS016746_Baylor_scaffold_2870__gene_2410	F043990	MIKKLGIIFTIGVIILGIAVYANHKIERSWIEGEFGVNMSNMNIDEKYRKEEWAPNGDGEKTIILTYDQLDNSFTKLNKLPIKEDLPPNGTPEQFLNTTNGYYKYVVDENDDWNFGILIVDTARKEICIYNQIL
SRS016746_Baylor_scaffold_28803	SRS016746_Baylor_scaffold_28803__gene_33344	F080165	MKNIKILLLLLSLTACNNKTKTISTLDLEKTIIDYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIYKDGPMGGRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR
SRS016746_Baylor_scaffold_34924	SRS016746_Baylor_scaffold_34924__gene_41391	F059076	MTNKILLLGLLLGGVSINAQTINETNAAGKTKQKVGINTTIPTRTLTIKNAAADKGKPVLRLVDAPVYSKNVNSDMDADLGGNTATSTNYTDYRPLLVDAVGDVYQGLPINNMSILTLTISNVNGDWISNFDTGINYNKYAVAIMSATFKMPSPASGGLVMLRGGNNVPSVDFGGGKYGVTTAPATVLLQQHGANWAISADYPNIGVYELSSGSTALGQPVNGTWVITLLVGKRDAVNFTELNFNQSGGSTGTGRNDNTYKAGLESFLQKLE
SRS016746_Baylor_scaffold_4183	SRS016746_Baylor_scaffold_4183__gene_3697	F074985	MELTDGGWYKTPRIVKGEDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRRLYEVDTENAVLFTINKCPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIINHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRIPLTQKFIYNPISGSWSLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDDEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID
SRS016746_Baylor_scaffold_4183	SRS016746_Baylor_scaffold_4183__gene_3698	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLISNGSVLFLAEERKTYNAKEYYDYWTAREGRPAPFFYESQQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDAQKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF
SRS016746_Baylor_scaffold_4183	SRS016746_Baylor_scaffold_4183__gene_3699	F027205	VASRLIVSADDILKAVKESEEFERKALNEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIIDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIKRSAK
SRS016746_Baylor_scaffold_4183	SRS016746_Baylor_scaffold_4183__gene_3706	F018385	MMAEYENQWGPYKEHSIEKDRDPVLDDPIIYGVNVKHFTVTVYSQDGRVNKYWNARILKDDLGYCRIACPRDGKILCFNYVHWTTYMFTHDGLNELVFMPGSSRKTISRLYYEEVT
SRS016746_Baylor_scaffold_65737	SRS016746_Baylor_scaffold_65737__gene_84103	F081454	MKAFKLVLLLFITSASLVFGQEKRYFFKYEYHPNSKYLIKLKTDMDGGYKFVGSKEVIDKIGMNEVEMKMNMNIGSTISTQKKQDNNIPFVLEYTDYISEAEINGEKVNRKIPIQGVKLRGDIINGKKMEVKNVEGNIDEDTKKILTESIKQFSAIDTDFPKEGLKIGDSFDMVIPYKQSIPNAGDIEMKMNVKYKLLKVEKEEAYFDMLIDFVMGDKNVKNIDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSVVTQQKIK
SRS016746_Baylor_scaffold_75568	SRS016746_Baylor_scaffold_75568__gene_98834	F085821	EQLAPLAETKKQQTTIAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENKKQFLNWIFMEPVYYLKYFISDASTQKKLHHDLLNLWYESNKRLLLEQDKGKHDEAYIDAWNEANVNKTLSIIRSGETIASCKEDVAKHSRTLNDEYEQNVNLLDEYCRALLYTAETTKSQQELVAETQSHIALLKNLYKKVNKIK
SRS016746_Baylor_scaffold_82366	SRS016746_Baylor_scaffold_82366__gene_110218	F105377	VRSEVRDFDKLPLLTPEEAVERAWEVGGSARPVFDRGYRVQGLNSWKAMETLLQQNDVRDITVASFGLKRFEEILDAIAMLHERGWHLWQTSANVYVDGEKRPVQAIRAHYRGI
SRS016746_Baylor_scaffold_90777	SRS016746_Baylor_scaffold_90777__gene_127742	F043991	MGKKKPSAVDGFDLNGNVIEEANEFDGVLIEEWVNQRSPLKPSWVGQYSDQMHFDLKNGTEVSFYKRPDIVYGDILFAEGIRTILFKCRQKKNLTRFISRVLKLAEMGPSSVHPDLRA