Scaffold SRS020220_Baylor_scaffold_51963

Overview

Basic Information

• Taxon OID: 7000000647
• Scaffold ID: SRS020220_Baylor_scaffold_51963
• Source Dataset Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160400887
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29188
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (76.19%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: National Institutes of Health, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F095629	Metagenome	105	N
F105379	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
SRS020220_Baylor_scaffold_51963__gene_62653	F105379	AGGAGG	MVIQFQLSQSDIESLLSISKLLKCDKILYDRNYINSIIGVGPERSYFQTTSYMIDLDPSINNLLVNSLDLKNLSKATDGADITKTNVPVFDWDTVYIKSCMNSLREYQVDSHIIAKDDNFHESNCYSELMAGSASTGACRINVDKYLIDIPKSAMPTLKSDHVEAIVYEVPNRNFNVLRFKITKRNGIIVNQSMLFLPY
SRS020220_Baylor_scaffold_51963__gene_62658	F095629	N/A	MEVFKMRELIICACLFGCFGVANAATPIEQPKEVKVVHNDDSVALHKKVYKLEQRVERLEKLLLEKEGK