Sample 7000000647

Basic Information
IMG/M Taxon OID	7000000647 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0063646 \| Gp0053223 \| Ga0031296
Sample Name	Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160400887
Sequencing Status	Permanent Draft
Sequencing Center	Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

7000000647 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0063646 | Gp0053223 | Ga0031296

Sample Name

Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160400887

Sequencing Status

Permanent Draft

Sequencing Center

Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	92479149
Sequencing Scaffolds	17
Novel Protein Genes	20
Associated Families	19

Dataset Contents

Total Genome Size

92479149

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	5
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes

All Organisms → cellular organisms → Bacteria

Ecosystem Assignment (GOLD)
Name	Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
Type	Host-Associated
Taxonomy	Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Ecosystem Assignment (GOLD)

Name

Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Type

Host-Associated

Taxonomy

Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal surface

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Host-associated → Animal → Animal surface

Location Information
Location	National Institutes of Health, USA
Coordinates	Lat. (^o)	N/A	Long. (^o)	N/A	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

Zoom:	Powered by OpenStreetMap^©

Location Information

Location

National Institutes of Health, USA

Coordinates

Lat. (^o)

N/A

Long. (^o)

N/A

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F032313	Metagenome	180	N
F066860	Metagenome	126	N
F067847	Metagenome	125	N
F071328	Metagenome	122	N
F078842	Metagenome	116	N
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F081510	Metagenome	114	N
F089057	Metagenome	109	N
F092229	Metagenome	107	N
F092232	Metagenome	107	N
F095629	Metagenome	105	N
F095631	Metagenome	105	N
F099452	Metagenome	103	N
F099453	Metagenome	103	N
F103431	Metagenome	101	N
F105376	Metagenome	100	N
F105379	Metagenome	100	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
C3592887	Not Available	728	Open in IMG/M
C3596519	Not Available	758	Open in IMG/M
C3630035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Neisseriales → Neisseriaceae → Neisseria	1511	Open in IMG/M
C3630687	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonia	1554	Open in IMG/M
C3631205	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1589	Open in IMG/M
C3633475	All Organisms → Viruses → Predicted Viral	1782	Open in IMG/M
C3633805	All Organisms → Viruses → Predicted Viral	1813	Open in IMG/M
C3638933	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	2657	Open in IMG/M
SRS020220_Baylor_scaffold_12922	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	26331	Open in IMG/M
SRS020220_Baylor_scaffold_30566	All Organisms → Viruses → Predicted Viral	2832	Open in IMG/M
SRS020220_Baylor_scaffold_3471	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	47062	Open in IMG/M
SRS020220_Baylor_scaffold_48068	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	28256	Open in IMG/M
SRS020220_Baylor_scaffold_50864	All Organisms → cellular organisms → Bacteria	3335	Open in IMG/M
SRS020220_Baylor_scaffold_51739	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	19657	Open in IMG/M
SRS020220_Baylor_scaffold_51963	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	29188	Open in IMG/M
SRS020220_Baylor_scaffold_51965	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	17246	Open in IMG/M
SRS020220_Baylor_scaffold_52574	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	23564	Open in IMG/M

Sequences

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

7000000647: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 160400887

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3592887	C3592887__gene_143388	F032313	KPQFDEVGERIWYGQTPAMRLDSTDYGAGLIWVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPKFVGGSITKEFTCRNGVILRHMQGVDINCVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKYAVEFLQQGHNIWGPFDWYYGRNSGRSEVTLEAK
C3596519	C3596519__gene_145072	F032313	GERIWYGRTPAMRLDSTDYGAGLTSVFGMRTSSIPKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWITTTEFTCRNGVIVLHRQGIDVNHVDTVNYVYDEVGNEIVLEGTGIRWSVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEAK
C3630035	C3630035__gene_162700	F103431	MIDLDALIVGMLFFIQFFLQGIAWRVAIAHFLHAERGNAAAAAFDGAFGEDIADCHAEDDNDKDAESQKEGFHVCIPEG
C3630687	C3630687__gene_163086	F105376	MNEKPEVSAKEFGALWANVEHIKEGVDKHTITLERIENIARTNVTQAQLEKHKKESDERYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKTVTELQEEVQQTVRRK
C3631205	C3631205__gene_163416	F066860	MTTKKQKLQKQQAIDTWIVIALWVSAIWFSFARGFITGIGGWVLALLAPWALIVSCICLAIISRQMKKRHVSKDHLTTIVRASFIVMSISLFICGLAMPDFSDTETFSTLSVYTNNAISFETSKTIAIISGFVVVLSLLVVVTFGIAEDRE
C3633475	C3633475__gene_164788	F027205	FEKKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK
C3633805	C3633805__gene_165011	F089057	MTNIIPLIAKKYNRKGDTSGTLKSLVDDLVFIGDANDSLLFITNIPRETKYSIEEVFNIITSNDKYSEILNNVLSSLNIDLDYHKLLLNAINSESYKIISLISDNIPTPDLFLSKNNYGCLTTALGKSYTIFDKVLGMVISQLLHTSSKEDKILGLFMTICIINKDIDKLASLCTGYLAITKDELAVKDLMNESAMTAFKYMSDEDIHDVVDDINSRMVLSRYLNQM
C3638933	C3638933__gene_168592	F071328	MSQKHWTFTHIIRYFEEYERNPLLIERMKWEFILEGEYIVEFVKLCKHLVLERTIDPKKHQAAAIYLRYSSQLLLKKRRAIRRLGIEKEYVSAILRQYGIHYREYGDNEHRVFFLDRGINLYFSKHHQSSIYIIQRIEFSNEEYRSFILKVLPVKKSEW
SRS020220_Baylor_scaffold_12922	SRS020220_Baylor_scaffold_12922__gene_13705	F092229	MNKEYRFKHIPEVVLRNVKFIRENNIDIGNGDDVLDCMMEINPVLRQRIYDDYDLAKDVAERRFNSTIEDLDLTTILQKCTTRPYIAILNNIYFRYFNSKLIEDMFKLGESIKVLDLAIEYECEYYTVNSAKTNIRRYMQQAYFDKYAADADIISSHRVLTDPQVNAVKSAEFTYDLLMAARSENFNPEMVRDIFLKYGLKTNSSRNLYTRMDNNLSLYYYMEDYLDEYVKNGKVTYGSQEYRTIKEFKYLPLMNVLTQLTSSNPSGYILNHKLELVKENK
SRS020220_Baylor_scaffold_30566	SRS020220_Baylor_scaffold_30566__gene_33098	F067847	MFSHIIRVRGIFDDEPTTKKLYFHMSRREMFDFIKRYDNVTNFEKWLQAAIDNEDLYTMMKFFDDLIGTSYGERQGERFVKSEQIKESFLNSPEYEELFDQLMDNPSLVREFYNGILPEKIMKQVQQDPKYKELDDKLKETELKHL
SRS020220_Baylor_scaffold_3471	SRS020220_Baylor_scaffold_3471__gene_3519	F081510	MKLPNMKAIKSAAKHSYTVSKILAKKYAPVALVTTGLVGYGVAVYKGIQSGKKLEATKAKYEAKDEAGEEYTRLDVIKDVTKDVAVPVAIAVASTAAIGLGFAIQTNRLKAVSAALTMVTEEHARYRLRAKEVLDEETFKKIDAPIETKKVEIDGKEVEVESIVPKEGDFYGRWFKYSRHYASDDPDYNEAWVKEVDNMLTQKINTQSGGGMLTFAEVLDALGFEVPKAALPFGWTDTDGFYLEWDTHEVWNEDKQEHEPQIYVRWQTPRNLYSTTNLRDIIPGRKELA
SRS020220_Baylor_scaffold_48068	SRS020220_Baylor_scaffold_48068__gene_54821	F095631	MASDAVSVNKTLRSYQETVLNTVQNDTLLNANIYDIHQYIENIKKRYVDEDEITLSMGIFGYLGDVNSNALQNAVTMAAEYSNEAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELVLNTISDTFRFDRDIKIMVGDYEFHLPYDLIIKRIELPTGEYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYMTYHKTIITNNPLESKMLQFEFDNQLAGFDVDVKEYDQPTRKLKPVYNGLNTDGVQNFCNYTYIDSSTIRVMFDNTSYLPTANTEVTVNLYTSQGANGNISYKDSIYFRVKSDKMNYDRLNLLVIPTSDSQYGIDKKSIADLKRLIPKEALARGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPTNIIPTNTIPIEAIRRDFDNISDSNYILTAGNIIKYDGTTNASIAYQASEDELNAARKNEFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFIATKMNWYRHYISDRDTYFGDISIMQNIQSDIGLVHKDDPHDPEKITGVDIKVLAVFYTDDKYQVPYRWAEAEFVNYDQGTYVMDYKFKLNTDNKIDKNIKLKINNVYEVGNATRLSPGYMANNMHMKIFVFAKDVFGYNAGLHKSDQIFTADFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKVKKQDNGQISYIVDRVPVISYDYVNTEERIQDFINNLEKKRIHILDCLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLSEYIKNDIRKYIEDKSRISDIHIPNIVTYITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA
SRS020220_Baylor_scaffold_50864	SRS020220_Baylor_scaffold_50864__gene_60034	F078842	MIISSIYKTADNDGLIAHIYEHLLAQYVLKRLQDNEFFVLSDIILSAKTYGDTCFMDAELYSPEAKKTYDEALREFDKLVIPEDDILRAAGECGIEMNRNIVEVDRSELSKKLREVQISPWRKQIDMAYRKAQDESSVNTLFRTSYIKYSKESDDLFRECVLEYSIDESHIQTPVDQALAAIVMQIVALNFLTVVREKYTVYDRGDQWSEASISVGYRMFLGSLKKDDKIINQLGCDFLEYIKILSSSVFCDNLQKALVRCSDNHKQVILNRSVLNAILGGCVIGGKGWLEMASSAQIRRMINSIELDIYEVNS
SRS020220_Baylor_scaffold_51739	SRS020220_Baylor_scaffold_51739__gene_62076	F092232	MNTQAKFIADYNDKNRPKFNDKFFTKSDDDIIEDLKDVILSCERNKFYTIKVLGFEVIDDYTEVQKLLIGDETPSISIKDSDLKILKVTYHVACTKDEDTFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTAAAAKTQSITLKTNSNAVKMLRNFVDLNTTKEKTLRMAMFSVYLFDHKVTLFEYYLARFGWYETLSKFNFENIIKISDHDIDDPEYYTFAIANAHMKNPFYISAVKSFVDNDRILQSFIASFAKAISLYATKKTTLDQIYTTEFWVCKLGYNFVSSETSVFTKGNAIIESLENSYDIPTKKRLRLPDHIKEDIYSVLKWMACEFSSIRLKNNLDASSKRIRWSEYIAAMYIMLINVKLRRLPEKHDPNMEAYRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNYGVYEWNSFTNEEEPNVWDDNFSKMLNIYREEKGYTSAIMLADDAGLELTDTRDPEAVAFDAHLLGQTIAKVARTRAFEKQLRPALINMEDSCSIYFEEV
SRS020220_Baylor_scaffold_51963	SRS020220_Baylor_scaffold_51963__gene_62653	F105379	MVIQFQLSQSDIESLLSISKLLKCDKILYDRNYINSIIGVGPERSYFQTTSYMIDLDPSINNLLVNSLDLKNLSKATDGADITKTNVPVFDWDTVYIKSCMNSLREYQVDSHIIAKDDNFHESNCYSELMAGSASTGACRINVDKYLIDIPKSAMPTLKSDHVEAIVYEVPNRNFNVLRFKITKRNGIIVNQSMLFLPY
SRS020220_Baylor_scaffold_51963	SRS020220_Baylor_scaffold_51963__gene_62658	F095629	MEVFKMRELIICACLFGCFGVANAATPIEQPKEVKVVHNDDSVALHKKVYKLEQRVERLEKLLLEKEGK
SRS020220_Baylor_scaffold_51965	SRS020220_Baylor_scaffold_51965__gene_62671	F099453	MLRRKDMNRFDIIELAQETLIFVYNTFNGKVNTLDPYTRLNFVAGYLDTKTNIARTTPYGCIYISLEAFADTVEAHKFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYRDEIELQCVKQSCQWILDNIQYIRSFGLVVIPEVYQARLANLTNVVYTPKYPMAIAMGKLEYMLGKKFREFSNNNIEIEYVDRLKTHYTFMVCENRIYINSANLNDLGERLLNDKQYTVEYLEYGDSKLVIKITQGA
SRS020220_Baylor_scaffold_51965	SRS020220_Baylor_scaffold_51965__gene_62673	F080166	VNILANFENYTKVVEQIFELNYQLTLKMEVTFNNIIKRINTEIKENFHTEYVVGANKLTTNLRYKYRMRLSPRGETVGVIIDWDNYDDLCNIIDEAIDICDPNNKTSPFKRIYSTAGDLLDIKCDSLKVRYLHLDDRFGNRLDLMPFVLIDDHNGTLTEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGSMARYMAITPLLGNNRQNMMRS
SRS020220_Baylor_scaffold_51965	SRS020220_Baylor_scaffold_51965__gene_62674	F081455	MENFLAKEIGTLIGKHFGFVDNIDLDKDPIITSNNIIDIPPVEEIGMQNVEIIDSAEEAIQQPLANTDSSIAVNFSQMINKPEEVKTELVSTPDNGEAKVNVVFPKNEHILGNYVDYESFNKIKESNTDKIVRAVRLLNYKMADQNAAMKFGQFVSEFNYECDPNKRLRYELIRHQGREKDLVVRLSTVINGTTKYYVDIYPDLNKIDIDHHLISSARK
SRS020220_Baylor_scaffold_52574	SRS020220_Baylor_scaffold_52574__gene_64722	F099452	MDKTYTELLQETLSKIYKLKDLNNRDRGKALTIFIGERLNRELLLSSMNIFNLYKEIVNLDDVSLLTDLRKTPWYKDWFTHSHENASLIDLSKFNFRSLERFEKEEYLKDVESYDFEAATTVDSYSLFDTLIEDNSVDLFKLAAENILINHGFFNNTDYNLYDIPDKYMEDTDVCLYMCLLNSDNMDFMDKKTFKSTELFYIVKNNICGTIFFTLFDRMNEDIRTRAR