Scaffold SRS015278_WUGC_scaffold_23221

Overview

Basic Information

• Taxon OID: 7000000640
• Scaffold ID: SRS015278_WUGC_scaffold_23221
• Source Dataset Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763982056
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12068
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: National Institutes of Health, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F043991	Metagenome	155	N

Sequences

Protein ID	Family	RBS	Sequence
SRS015278_WUGC_scaffold_23221__gene_52027	F043991	AGGAG	MGKKKPSVVDGFDLNGNVIEEANEFDGVLIEEWVNQRIPLKPSWVGQYSDQMHFDLKNGTEVSFYKRPDIVYGDILFAEGIRTILFKCRQKKNLTRFISRVLKLAEMGPSSVHPDLRA
SRS015278_WUGC_scaffold_23221__gene_52031	F018385	GGAG	MAEYVNRWDPYSELSIEKDRDPVLDDHIIYGVHVEHYTLTVYSPEGRVSKYWNTRILKDDLGRCRIACPREGKILCFSWFDWDAHMFTHDGMNELVFAPKLNSRSVLSLWNKQEVK