7000000640: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763982056

Overview

Basic Information

• IMG/M Taxon OID: 7000000640
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053216 | Ga0031020
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 763982056
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 82739045
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F030786	Metagenome	184	N
F043991	Metagenome	155	N
F057446	Metagenome	136	N
F097525	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
SRS015278_WUGC_scaffold_23221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	12068
SRS015278_WUGC_scaffold_24463	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1181
SRS015278_WUGC_scaffold_50518	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium → Chryseobacterium gleum	3641
SRS015278_WUGC_scaffold_61224	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2529

Sequences

Scaffold ID	Protein ID	Family	Sequence
SRS015278_WUGC_scaffold_23221	SRS015278_WUGC_scaffold_23221__gene_52027	F043991	MGKKKPSVVDGFDLNGNVIEEANEFDGVLIEEWVNQRIPLKPSWVGQYSDQMHFDLKNGTEVSFYKRPDIVYGDILFAEGIRTILFKCRQKKNLTRFISRVLKLAEMGPSSVHPDLRA
SRS015278_WUGC_scaffold_23221	SRS015278_WUGC_scaffold_23221__gene_52031	F018385	MAEYVNRWDPYSELSIEKDRDPVLDDHIIYGVHVEHYTLTVYSPEGRVSKYWNTRILKDDLGRCRIACPREGKILCFSWFDWDAHMFTHDGMNELVFAPKLNSRSVLSLWNKQEVK
SRS015278_WUGC_scaffold_24463	SRS015278_WUGC_scaffold_24463__gene_54623	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFFELLGLLEWFEQISADKEKSTEIGFIEPELAFEYQNKKLTVLLCYDIAPVSYGEEPYQLTFSLDDKTLAMIIKELGEAVASFKRE
SRS015278_WUGC_scaffold_50518	SRS015278_WUGC_scaffold_50518__gene_108702	F057446	MNSISFGKTTITSYPEYFEIADNKKTNKLLYLSASFVFIAIYLFDLYQNDFDFGKVSHFKTISAVLWLVIFALQFWLINTESKIEKSKIKEVVVRKNRWASIVIHYRDKKRKIDGFSQDEAEQIIKFLMNNR
SRS015278_WUGC_scaffold_61224	SRS015278_WUGC_scaffold_61224__gene_133315	F030786	MLLKNGSATKGGSTMGTKKISLTDITEGDDSKEGVIKVKYFDDDGADKTFENNNNRILNTINSQHISFNSQTAEYSKPQLFLLYRSLKVDC