Scaffold SRS015782_WUGC_scaffold_32895

Overview

Basic Information

• Taxon OID: 7000000628
• Scaffold ID: SRS015782_WUGC_scaffold_32895
• Source Dataset Name: Human stool microbial communities from NIH, USA - visit 1, subject 764224817
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 40177
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (16.36%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: National Institutes of Health, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064817	Metagenome	128	N
F080163	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
SRS015782_WUGC_scaffold_32895__gene_73098	F080163	N/A	MKTIKFLQESFETKERFQQEISIKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCDAKQFLENINDFDKILFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLKSEILDSEIELLQEKLDLIREEICELIGINPNLEKQGHKDNYVFNLNIDSDNQIGLFLQATEL
SRS015782_WUGC_scaffold_32895__gene_73112	F064817	N/A	MNIKNLFNRFRKSKESELSYSLNLIYLEDTRVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKREYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI