7000000628: Human stool microbial communities from NIH, USA - visit 1, subject 764224817

Overview

Basic Information

• IMG/M Taxon OID: 7000000628
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053203 | Ga0030492
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 764224817
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 191702969
• Sequencing Scaffolds: 15
• Novel Protein Genes: 28
• Associated Families: 28

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
Not Available	3
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F044554	Metagenome	154	N
F050794	Metagenome	145	N
F057001	Metagenome	137	Y
F058555	Metagenome	135	N
F064725	Metagenome	128	N
F064817	Metagenome	128	N
F068855	Metagenome	124	N
F068941	Metagenome	124	N
F074964	Metagenome	119	N
F075481	Metagenome	119	N
F077313	Metagenome	117	N
F078004	Metagenome	117	N
F078006	Metagenome	117	N
F080163	Metagenome	115	N
F080673	Metagenome	115	N
F083451	Metagenome	113	N
F085718	Metagenome	111	N
F087336	Metagenome	110	N
F088914	Metagenome	109	N
F089590	Metagenome	109	N
F089592	Metagenome	109	N
F090484	Metagenome	108	N
F093883	Metagenome	106	N
F098313	Metagenome	104	N
F099406	Metagenome	103	N
F101355	Metagenome	102	N
F106193	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C3332067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	574
C3480850	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2424
C3494264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3980
C3498537	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	5164
SRS015782_WUGC_scaffold_15471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	8981
SRS015782_WUGC_scaffold_20641	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	10230
SRS015782_WUGC_scaffold_32046	Not Available	19443
SRS015782_WUGC_scaffold_32895	All Organisms → cellular organisms → Bacteria	40177
SRS015782_WUGC_scaffold_33639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1280
SRS015782_WUGC_scaffold_34101	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	18258
SRS015782_WUGC_scaffold_36211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1519
SRS015782_WUGC_scaffold_36402	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	9344
SRS015782_WUGC_scaffold_37667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1683
SRS015782_WUGC_scaffold_41648	Not Available	25223
SRS015782_WUGC_scaffold_42087	Not Available	67851

Sequences

Scaffold ID	Protein ID	Family	Sequence
C3332067	C3332067__gene_211116	F068941	MKNNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEEGIKKDITVIASEAGSTMSLYMDLTTMPNELKEESFVYELYYNDTTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPNTMQNKTLSFNLYATGKNATLN
C3480850	C3480850__gene_285810	F057001	MTNKELNKVQNEVKKVSEKTLTGAVKAWCQLFKSGKEINEILKENEIKVDKSIVSALVNLAKDKEVVIQLCKEILPRVNNTFCAYREVEREYYDKNEQDKNKKLKMSEIEDVAILGSYHKRFGYNEPVEYDFGIYYETFNGADKRIIKCAVPIKRYTFSLIAKCVTYYLTHPKNER
C3494264	C3494264__gene_294762	F088914	VGRILPVCSGFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIVTELTDGRVSDSLFSVPYTPKENRKNPGEFIVFSAWYAAKALEVDVK
C3498537	C3498537__gene_298039	F085718	MVIEFDFEIYKNGDYDKVYLRNGKEARVLCDNGKGNSPMVVMIEDDKADDYIILRYNETGRRNINGQSGLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSRNIRGYIYLQGSSKSSVSYYVDKLEEDGCFDELCEKIRVKRDRIYNMEIISLSDDETAV
C3498537	C3498537__gene_298040	F078006	MGDNILRKAAEELKKTGCRVFAWQDDTYNRGWSKGDYTMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSCGSGSGCCVKEEATFDLEAALDVLNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI
C3498537	C3498537__gene_298045	F080673	MDEITKLQDEALLYLRDNITREEAYYILTTDKEMIEILIADKKDGSKRIKILDAEYAIEKDDMLFLFDTDGVIDECLLVASYIGVNMYFRRQDVNAILNNINREKVMKYPYIAIQLDNIQTVEKRRVVFEITGHRMDDNKERIDFMFIYFMARLCV
SRS015782_WUGC_scaffold_15471	SRS015782_WUGC_scaffold_15471__gene_34465	F068855	VPTVEAQGPQVRKSLALQGLQAEKERENANVQNAGWLHSFDADYHYHGSDLHYHVN
SRS015782_WUGC_scaffold_17807	SRS015782_WUGC_scaffold_17807__gene_39569	F078004	LDIHMIRHALVIAVINTFYRLTVDADRMAWMRQGIAERFSSLSLLRKAFTAGSVTVAGVLATHHDVSLATQTVLIIGTIFHNAF
SRS015782_WUGC_scaffold_20641	SRS015782_WUGC_scaffold_20641__gene_46005	F099406	MAEIGYNSKFEGQEVDSRLENVVQAAPGTGSESGKGGLIPAPPAGSQDGSKTLLSNMTWGDHVTKQYIDDAVSAAGWKKQIVSKLPTVEEAKDNVMYLVKDDVASTETKNVYNEYILVTEEGGTKVLESLGMVSTGVDSSYLDLSIFPSTSGTLDEDSYAKVLNAYNNNITLGKLSFYYFSLDYFLDNDNSELKIIAVLFNNTNSKEDVSGSYIDIEMVTYVVSQDKTYRAIANTATLSNDMLSYLKFMAKTPNVVTTLASLPIDAHNIIANVASATNLSMAVSAEDAGREWQVRVNNTTGTDITQPLPTSGLFQSMSGDSVVVPKNSFIELSIWYINDKLVIRVGEQA
SRS015782_WUGC_scaffold_32046	SRS015782_WUGC_scaffold_32046__gene_71068	F077313	MSKYVIKRKIPKYQEAGEVDPVMPGNVVGLQGIGVEPLVSSTQIGFDIQYPDINTIDTSDLSALVESNKKVDKSGSTDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTRAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVTQPGEAPMEAMGQKHADGGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIAEAKKELLKKVAGIRQKMEKGGSSLFDYLLTFRPVENKYNNKDNTFGYQRQGQDGSYGGINTDERLEYYKTFMPLAYDAYMSAPKATAAKALQDAIYNTTGGWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKFGQYSSSRPMIGLDVVTEDQHKALNDAGITHFSQLFSDKNKDIVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEDPDVKLDMPELIDPNTLPKTNTNAGKSNGGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGKYINEVEQGNVAQRTWADNVNSQSWANTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
SRS015782_WUGC_scaffold_32046	SRS015782_WUGC_scaffold_32046__gene_71071	F050794	MLYTSNYFVDVRQKQLLDHTYALSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEYNGIIKKLMKEAEKLELDTDAIKEMMRDLLNELKDDIDLNILIFDVTQLLIKYNLFRLDAITEREFKDSFVRMDSRNMEIKKLTLSDIKKVVMMMEIRYNRFVW
SRS015782_WUGC_scaffold_32895	SRS015782_WUGC_scaffold_32895__gene_73098	F080163	MKTIKFLQESFETKERFQQEISIKYSYNRDTVESIDFRINQRNIRYFYEAMQNFENSLVNEFKEKKNNFCDAKQFLENINDFDKILFVIITYMKTYFDFCKDYSKISLHVHLVQFDFTTSVLIQGFYNYTHRDLSFSTKLKSEILDSEIELLQEKLDLIREEICELIGINPNLEKQGHKDNYVFNLNIDSDNQIGLFLQATEL
SRS015782_WUGC_scaffold_32895	SRS015782_WUGC_scaffold_32895__gene_73112	F064817	MNIKNLFNRFRKSKESELSYSLNLIYLEDTRVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKALVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVGLEEILELMQHNWLKEFELLVFKREYDTDMLFLSHSLTYILDQTEEEGRRICIQNIIERNINQENQDENETI
SRS015782_WUGC_scaffold_33639	SRS015782_WUGC_scaffold_33639__gene_75143	F101355	MAFWFIQWYLPSAQPPQPKGAGAVFPYVLPRCSYFFKMFVTEMSIFICMHKCLAQTGRLRGSSCYIVVAAKRACACTLLWIPDHFYKKLLPYVLFPFFKIYLKKIDFFQNIA
SRS015782_WUGC_scaffold_34101	SRS015782_WUGC_scaffold_34101__gene_76310	F083451	MNVNLINKINNFSNVDKNEREKQVLDLLMSRKDIRKLVEKSNECYSKMDFVGAMKCRQEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDIFKEEAKMTKETDRSKIEEFNKRLDHE
SRS015782_WUGC_scaffold_36211	SRS015782_WUGC_scaffold_36211__gene_81810	F087336	MHCLLRGMVAELEQVPKAFRAAGRQRIAAAKERIKDDAIGHGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP
SRS015782_WUGC_scaffold_36402	SRS015782_WUGC_scaffold_36402__gene_82282	F098313	MREKKFDFVIYPLDLIITVGLDYKTLCDRFENMEPEHEGKWGDEDDMDKEASFVNLVRDRDDDDKFAILWNFSSDDDLIMRNICHESFHIAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGHCVGEFINNKDMD
SRS015782_WUGC_scaffold_37667	SRS015782_WUGC_scaffold_37667__gene_85887	F044554	VLAGRFIPVLCASIARLFPCRTEIAWCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSTFLVL
SRS015782_WUGC_scaffold_41648	SRS015782_WUGC_scaffold_41648__gene_101352	F074964	MITKKNVNKLQNAVIKENASNLVGAVKLYNALFANGADLKAVCKTLEIPAEYAVKVAALAKDKKRLVAVCSQMLPKVGDTFVKFSLYSKVYKDNEVDKEKGIEAKAADWCAENVVYGSEYKAFGFTTAESLETKKSTKWLIKETDEYKATYVAVKIKSYSIRTVAKCVSEYLAHESNQQ
SRS015782_WUGC_scaffold_41648	SRS015782_WUGC_scaffold_41648__gene_101372	F090484	MIKISRRDSRIRFKNQKDLLHKLGIAYSKFKNMTGHPMFNELFRMTDSTFVARRYRVNGVQLTLGCGKVNLPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGETNSQADVVDGSHSYYGLIDSTISNKTIALYLNVGLTKAKEIVGMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHGAVFWQIANTWTLYKKGATNRWYFGEKDIEKGEKEKVSKKDDFNFFLKDNTHILRFLNAEEVVSEDGEILGIDRKKTKEEEARSLASVMAKEAHKNFWDGYERSTQNQIVRKYYRAIIAEDKKRRMDMFLNRLKQSYDKVSGWSKEKVATVKAGMADAEACCAEVGTSVAGVCGRVSRRMKTYNNTAPDKKAGFNEVRDMYAEFAGEMAKAVGSVSEDIYTYVKAEQFKEKIENMDISIQSLPNINTTVENDKELDGESVFKDIPLEELSFYNDTYLYPSSQYSSL
SRS015782_WUGC_scaffold_42087	SRS015782_WUGC_scaffold_42087__gene_105512	F064725	MGLQTVEVFVIQLAREGRLDFFCITDSNTYLCAKDLNMTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAIVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKLYIGSHEVRFHYHHPVRLSIGRGLRRDCASDKYRDKYAWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFSRAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKLV
SRS015782_WUGC_scaffold_42087	SRS015782_WUGC_scaffold_42087__gene_105525	F106193	VGCNTCKEKALKAERERIERSMMNRASSTVVSDMEYASRSTAGCMVMLDPLKTMERDVVSIYKQTRTIGDVGIVYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILNGRAEHIKP
SRS015782_WUGC_scaffold_42087	SRS015782_WUGC_scaffold_42087__gene_105528	F075481	MIRLRISLKAVFCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGRRDSTVTTDSLGVDKTITSIEDIDKKTDIKHKDIDDKEESRWPMAIIFMSILGILVVLFVLLKRFGLIK
SRS015782_WUGC_scaffold_42087	SRS015782_WUGC_scaffold_42087__gene_105529	F089590	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLFIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFADAYLVKVFKAVFKRINVFKMFGFSKNIPDEMFDDIKKIADDKVKDKS
SRS015782_WUGC_scaffold_42087	SRS015782_WUGC_scaffold_42087__gene_105531	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNPFNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGRDNYCIIFRSLAIQHKKNPNTTWWFRKEDGSQYVPIDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCKMTSFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVMPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNIQTLELSSCYLDRYIKEFNDLPKLTSLKIYPAPSDMWNYFDINTLPFFEVDKINPNITDFYFLDDWVSGERRTGWNDDNMSGRGLEHLTGFVAAHSNSLRMDKLPDYIYEMRAITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYVATYPTENQRPSGTEQAPDGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE
SRS015782_WUGC_scaffold_42087	SRS015782_WUGC_scaffold_42087__gene_105538	F089592	MKEILKSKKVLVEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSEVYNTGFYPRSRCYNGMDKDEVDKLVDQRVNNIMKPFENISQKDLSQTNFEFWDDAKDKIYMGKVYNTANTVELFYLYLAVFSGMLTPQEMDGDPIFMNSMFCFIEKDNAKDFVQQREINKMNISYKFISALKKGGDDRQAVIDLLLYIGIVTRPDFTEDEYYTGSLSNWMNEKKTNVDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDVRTSAEFLATKKDFINIKANVLDEYEEIISMSNIDDKSKTKKVKDIKKKDDVEEGDKVKEE
SRS015782_WUGC_scaffold_42087	SRS015782_WUGC_scaffold_42087__gene_105544	F093883	MEEDKDIKKEIRDYLKEEADTHIRHWMAIKRESKRLYSEIEDRTKKIALKSSSLIKEEDFVSLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIMEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKDMKANATGKTKAD
SRS015782_WUGC_scaffold_42087	SRS015782_WUGC_scaffold_42087__gene_105548	F058555	MGTKIRFLHIMKSNFDKILTERYIPRNIQTKKDELGCVKLPAGSLICPVDFKPVTNKEGKKVTAIKYSLKHEEYHGSGIQISDECKMAMIYLIIINVSKHVFLRKRMQDGNRDQIEINTNDFIDILSDGCAYFCYRHVLRDSHEDMNYQLISLKAWAEGEIMIALSDIIKYKHKASKTPRIKDMFVKKGESVYTCLDKNLDSNTRRRMANKSRKLNRVKMLSKIIFSARNRNINKIYKVTKKRTIKFNVSYLMDRLNIKLSKEGMMLISQRTVYRMIKEVLSMCCKTISDLYDEVKKNNGIVNTKDRKNVTIGHLRLSYRGTIMHIIIAEYFIKDVFLGVKGSEMSKAG