Scaffold SRS057022_LANL_scaffold_35328

Overview

Basic Information

• Taxon OID: 7000000623
• Scaffold ID: SRS057022_LANL_scaffold_35328
• Source Dataset Name: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 246515023
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8910
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (81.25%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: National Institutes of Health, USA
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036281	Metagenome	170	N

Sequences

Protein ID	Family	RBS	Sequence
SRS057022_LANL_scaffold_35328__gene_41945	F036281	AGGAG	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKELFVTEFKPTCDDQWIMYMTNVDGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRLSDDLKSKFTRHTITNEKGHQSYDWVLKNVEWAADTIRYF