7000000623: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 246515023

Overview

Basic Information

• IMG/M Taxon OID: 7000000623
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053197 | Ga0028025
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 246515023
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 32104366
• Sequencing Scaffolds: 2
• Novel Protein Genes: 2
• Associated Families: 2

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036281	Metagenome	170	N
F105378	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
SRS057022_LANL_scaffold_28052	Not Available	1010
SRS057022_LANL_scaffold_35328	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	8910

Sequences

Scaffold ID	Protein ID	Family	Sequence
SRS057022_LANL_scaffold_28052	SRS057022_LANL_scaffold_28052__gene_30490	F105378	MNVKVYVDKIKKWVQISSDEVLDVNKNLSDLKDKEAAITNLGLYEKFISKEALESGFLPDVFTPDNIVTDSIHQFVTDEEKNKWNNKLNVPVPMQDHLANNQIGYDSVNSKFYIGLNNQNVLLGGSSCFDNIIVVNGFFSGNSQPTVIRNNKFNEAGQLITPVFVDVQCVEYTAGDLGEVSVSYTTDAISIYNTGSFTGSFQCLIVYPLGSVNE
SRS057022_LANL_scaffold_35328	SRS057022_LANL_scaffold_35328__gene_41945	F036281	MITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKELFVTEFKPTCDDQWIMYMTNVDGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRLSDDLKSKFTRHTITNEKGHQSYDWVLKNVEWAADTIRYF