NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS062544_LANL_scaffold_16357

Scaffold SRS062544_LANL_scaffold_16357


Overview

Basic Information
Taxon OID7000000618 Open in IMG/M
Scaffold IDSRS062544_LANL_scaffold_16357 Open in IMG/M
Source Dataset NameHuman tongue dorsum microbial communities from NIH, USA - visit number 3 of subject 763536994
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25372
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (88.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameNational Institutes of Health, USA
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F095629Metagenome105N

Sequences

Protein IDFamilyRBSSequence
SRS062544_LANL_scaffold_16357__gene_21672F095629AGGAGMRELIICVCLLGCFGIANANNVEQPKEVKIVHNDNSVALHKKIYQLEKRIERLEELLKKEGK

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