NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS019894_WUGC_scaffold_20344

Scaffold SRS019894_WUGC_scaffold_20344


Overview

Basic Information
Taxon OID7000000604 Open in IMG/M
Scaffold IDSRS019894_WUGC_scaffold_20344 Open in IMG/M
Source Dataset NameHuman tongue dorsum microbial communities from NIH, USA - visit 2, subject 764892411
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7415
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F099453Metagenome103N

Sequences

Protein IDFamilyRBSSequence
SRS019894_WUGC_scaffold_20344__gene_20068F099453N/AMLRRKDMNRFDIIELAQQTLTFVYDTFNGKVNTLDPYTRLNFVAGYLDTKTNIARTTPYGCIYISLEAFADTVELHGFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYRDEIELQCVKQSCQWILDNIQYIRSFGLVVIPEVYQARLANLANVAYTPKYPMAIAMGKLEYMLGRKFREFSNNNIEIEYVDRLKTHYTFMVCENRIYINSANLNDLGERLLNDKQYTVEYLEYGNSKLVIKITQGA

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