NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS019022_WUGC_scaffold_51830

Scaffold SRS019022_WUGC_scaffold_51830


Overview

Basic Information
Taxon OID7000000599 Open in IMG/M
Scaffold IDSRS019022_WUGC_scaffold_51830 Open in IMG/M
Source Dataset NameHuman tongue dorsum microbial communities from NIH, USA - visit 2, subject 763961826 replicate 1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11549
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040149Metagenome162N
F055792Metagenome138N

Sequences

Protein IDFamilyRBSSequence
SRS019022_WUGC_scaffold_51830__gene_56869F040149GAGGVADEGAEELRGEVLIEEQGIPVLFVEVEAWYDGRVSSSEILRSVGVALEREPRLAPVWSHDSEDAIDYFIYDVLVPEGHALTAVRERETVVAQLLNIHRYVYYP
SRS019022_WUGC_scaffold_51830__gene_56870F055792GAGGVEIASEALDSTSAVAHRILLLTTQLGESLLASLGAENGVIAEAMVTRALERDLAIDCALEEVRPVFVDESDDSTEAGTTWSRYPLETLQKEGYILFEGSMLPCEARRVDPRCSVKSLDLEPRIIGEAIEPVALPHVARLDESIALQGIGGLRDLLVTPDVSETDYLQTPREEGTDLLQLMSIIARKYQLFHTFVS

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