NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold SRS064493_LANL_scaffold_17245

Scaffold SRS064493_LANL_scaffold_17245


Overview

Basic Information
Taxon OID7000000536 Open in IMG/M
Scaffold IDSRS064493_LANL_scaffold_17245 Open in IMG/M
Source Dataset NameHuman supragingival plaque microbial communities from NIH, USA - visit number 3 of subject 763536994
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4394
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063778Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
SRS064493_LANL_scaffold_17245__gene_14354F063778AGCAGMPETISEGAKQQLLQQLQDALGLVAEANTSTHDVAAITHSAADGHQLTEVMLQEMTAARGYLKSCADQINYAISKVEAIPLDPPPED

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