NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 7000000536

7000000536: Human supragingival plaque microbial communities from NIH, USA - visit number 3 of subject 763536994



Overview

Basic Information
IMG/M Taxon OID7000000536 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0063646 | Gp0053090 | Ga0031120
Sample NameHuman supragingival plaque microbial communities from NIH, USA - visit number 3 of subject 763536994
Sequencing StatusPermanent Draft
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size21440176
Sequencing Scaffolds2
Novel Protein Genes2
Associated Families2

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHuman Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
TypeHost-Associated
TaxonomyHost-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Host-associated → Animal → Animal surface

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063778Metagenome129Y
F101358Metagenome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
SRS064493_LANL_scaffold_11576All Organisms → cellular organisms → Bacteria124659Open in IMG/M
SRS064493_LANL_scaffold_17245All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces4394Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
SRS064493_LANL_scaffold_11576SRS064493_LANL_scaffold_11576__gene_6467F101358MTEKHSASPTAKEETLAPLPPRQPEHLLTQPITVDGAPEKRTTHPDAYIIPKHENVPQYLWNVLRSSGQLDEGWIDTEIIDENDVVLVRMTKPVHRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMMEDGKLQPVADTTHTASQSSATEQETEILPTQSGNTYDHLGGDSARQLVGSVAAKASDGEVDNSLLVRRALKR
SRS064493_LANL_scaffold_17245SRS064493_LANL_scaffold_17245__gene_14354F063778MPETISEGAKQQLLQQLQDALGLVAEANTSTHDVAAITHSAADGHQLTEVMLQEMTAARGYLKSCADQINYAISKVEAIPLDPPPED

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