Scaffold SRS045127_LANL_scaffold_12994

Overview

Basic Information

• Taxon OID: 7000000461
• Scaffold ID: SRS045127_LANL_scaffold_12994
• Source Dataset Name: Human tongue dorsum microbial communities from NIH, USA - visit 2, subject 604812005
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 88994
• Total Scaffold Genes: 83
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 75 (90.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F089057	Metagenome	109	N
F099452	Metagenome	103	N
F103435	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
SRS045127_LANL_scaffold_12994__gene_13531	F103435	AGGAG	MKFVFCTEPIYQYYRACVYDADKDKLDKQLLVEYGDYKDIWDLKQQQDALPENIFVAELTSRDYPRNPWNYVSQLINKLTYQYLIDSPDFENIFSEILFNQSEREFYEFYKAIDRFYNGSEIFITVGNDDYSDMVTQMVCSVLRRTYGIRPQIIYDIDDVHSIRDDIDFSPEGAQIAYLQRHTYLALEGKSTVEPLRVWYPFDMNSYTNALE
SRS045127_LANL_scaffold_12994__gene_13540	F089057	GGAGG	MTNIIPIIAKKYNRKGDTSGSLKSLISDLNCIDNVDDSLLFLSSIPRETKYTLDEVFDLITSDDIYIKIFGNVLTFLNMDLDYHRLLLNAIKSESYKIISIINESIPTPDLFLAKNNYECLSVALDKPFVIFDKILGMVVSQLLHTASSKEERIFGIFMTICIINREINKLASLCTGYLAITRDEVLVKDLMNESAMVAFQYMSTEDINNVVSDINSRTVLSRYLSNM
SRS045127_LANL_scaffold_12994__gene_13577	F099452	AGCAGG	MGKTYEELLQETLSKIYELKDLDNRDRGKALTIFIGERLNRELLLSSRHIFTLYKDIINLDDVSLLTDLRKTDWYEKWFTDDSNNANLIDLSRFNFKTLARFEKEEYLRNVEGYDFEAVTQVDGYSLFDTLIEDKDVELFKLAAENILISHGFFDNTDYNFYDIPDEYMGDKEVCAYMCLLNIENMDFVDKKTLDTTVLYNIVKDRICGSIYFTLFDSLNKDTRTNAR