Scaffold SRS015215_WUGC_scaffold_45226

Overview

Basic Information

• Taxon OID: 7000000449
• Scaffold ID: SRS015215_WUGC_scaffold_45226
• Source Dataset Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764143897
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42520
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 46 (85.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F051214	Metagenome	144	N
F081456	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
SRS015215_WUGC_scaffold_45226__gene_59023	F081456	N/A	LGYRLFLEKGAHMFEEPPIYYILISLIFLIVFGAVAFATWLVWLTPVSFMAKLVMTAIGFLLCAITVILYTISAE
SRS015215_WUGC_scaffold_45226__gene_59035	F051214	AGGAG	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNASDIIEYQLKNGDSFIVTYDPIQRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKDEWI
SRS015215_WUGC_scaffold_45226__gene_59039	F027205	N/A	MRAVKESEEFERKALAEARKRDRAEGKPPREVLHPDHKPGREIVLDYIKNPERRRAPRCSIHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIRK