7000000449: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764143897

Overview

Basic Information

• IMG/M Taxon OID: 7000000449
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052999 | Ga0031019
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764143897
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 115652778
• Sequencing Scaffolds: 12
• Novel Protein Genes: 14
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F027205	Metagenome	195	N
F043990	Metagenome	155	N
F047508	Metagenome	149	N
F051211	Metagenome	144	N
F051212	Metagenome	144	N
F051214	Metagenome	144	N
F055792	Metagenome	138	N
F063778	Metagenome	129	Y
F081456	Metagenome	114	N
F095630	Metagenome	105	N
F097526	Metagenome	104	Y
F101358	Metagenome	102	Y
F103430	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
C2523146	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	610
C2533671	Not Available	662
C2562653	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	899
C2593816	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1699
C2595652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	1813
C2607920	Not Available	3915
C2610024	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	5373
SRS015215_WUGC_scaffold_10939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	3716
SRS015215_WUGC_scaffold_27108	All Organisms → cellular organisms → Bacteria	3039
SRS015215_WUGC_scaffold_34236	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	3117
SRS015215_WUGC_scaffold_45226	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	42520
SRS015215_WUGC_scaffold_46895	All Organisms → cellular organisms → Bacteria	37521

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2523146	C2523146__gene_158921	F051212	ISEKQNAEKVERIIYSQTGGDTGGKNVHLVITKDSIIYRLTEGVTDEKTIANLSLNNNNKDWEAFIDKIDLEDFEKGKPSKELIMDLPTTKIIIKTDKKEYSKTNIQNNKTWDYITKQVIDIKYSKLYNHLNLEK
C2533671	C2533671__gene_163079	F022002	RGRRLTKETTMNMMNIYSPSSRSMSSRLALTLGLLLALLLSLPSYAQDGQSKEPISRTISGFTLGVTTPAEARAIIQRQSGEIEETQAWSDEVVYAITGLKYERCPTLSVRLYFYKGHLRSISFTFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELDRAYSAENENEI
C2562653	C2562653__gene_174942	F043990	MIKKLGIIFTFGVIILGIVVYANHKIERSWIEGEFGVNMSNMNIDEKYREEEWAPNGDGEKTIILTYDQLDSSFTKLNKLPIKEDLPPNGIPKQFLNNTNGYYKYIGDENDDRSFDILIVDTTRKEICIYYQIL
C2593816	C2593816__gene_188965	F095630	SQSCKCLGGYFLADKETNKMMYSSLYKTVENNGLLAHIYEHLFAQYVMKALQRRGFFISSDITLTAKTYGDTCFIDAELYNPEAQDAYNEALRLFDEWDIPGSATLRAAAECGIEMNRLVTELVQDELLHKLSAVQSSAWRQQSDITYRKADDKSSVNTLFRIPYIKYGVESKNLFPEYVLEYSVDEKHIHSPVNQALAAVVMQAVALNFLVMIREKHTVYDRGDQWSEASKSVGYRMFLGLIKKDDNIVDQLKREFMEYMQFLSTSSFRDNLQAALVRCSHNYEQVLLDRDTLNSILGGCVIGGKGWLKMADNTLIGQILKAIEIDVYDI
C2595652	C2595652__gene_189877	F097526	KAGRNEHPDPAEQKRRARWDSNLAGLQQQARMAHCEIVNADNAAVSQLTQQCEKNGSCDTAIPSPHDDGYGFTAGLRDIPLNTSQTALLWRIALLTIAEMTDTAPSLVACYLNGTGGEHLGRALVEKTVYPVTVVSNLARLLHEQHKSGQLQRDLRHIAAREPENAAVMPAVAPEPVVTLQAAEQPEITIHNPTTGATL
C2607920	C2607920__gene_196625	F103430	MKLITIKAFIGSDNQTKQLNIDTIVSIVNTNHEAFTLQYPVIGYWRGEAEQTAVLYLSDEHQKVMSTLSELKEVLNQEAIAYQIENDLQLI
C2610024	C2610024__gene_198113	F047508	AVLVVEFVGEPVHIGMLGHRLVEGRVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFKNVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP
SRS015215_WUGC_scaffold_10939	SRS015215_WUGC_scaffold_10939__gene_12426	F063778	TISEEAKQELIRQLQDALNLVKNADTSAHDVAAITHSAADGHQLTEVMLQEMTAARGYLKSCADQINYSISKVEAIPLDPPPED
SRS015215_WUGC_scaffold_27108	SRS015215_WUGC_scaffold_27108__gene_32952	F051211	MRVKKAIKIFEKIRDLPYGTSGSDEVWSCYQKCVLLKQELQHIGITSQLLIGVFDWQDLQIPEHILKIRRQQYERHVILRVFIDGSTYDIDPSIDIRLAPTLTIAHWDDTSSTATMASLKHLRIYRPHSLHERILSRLRRKLFRGNPKEFYTAIDKWLADTRAHQSS
SRS015215_WUGC_scaffold_34236	SRS015215_WUGC_scaffold_34236__gene_42796	F055792	MEIASQALDSTPAVAHRILLLTTQLGESLLASFGAEDGVITEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYPLETLQKEGYILFEGSMLTCEARRVDSRSSIKSLDLESRIIGKAMKPVALPHVARLDEGIPLQRIGGL
SRS015215_WUGC_scaffold_45226	SRS015215_WUGC_scaffold_45226__gene_59023	F081456	LGYRLFLEKGAHMFEEPPIYYILISLIFLIVFGAVAFATWLVWLTPVSFMAKLVMTAIGFLLCAITVILYTISAE
SRS015215_WUGC_scaffold_45226	SRS015215_WUGC_scaffold_45226__gene_59035	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNASDIIEYQLKNGDSFIVTYDPIQRIIVMRVFLHDEDITIKPIYIYNNREYQIACEFLRQIMHDKIDLKDEWI
SRS015215_WUGC_scaffold_45226	SRS015215_WUGC_scaffold_45226__gene_59039	F027205	MRAVKESEEFERKALAEARKRDRAEGKPPREVLHPDHKPGREIVLDYIKNPERRRAPRCSIHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIRK
SRS015215_WUGC_scaffold_46895	SRS015215_WUGC_scaffold_46895__gene_61702	F101358	MTEKHSASLPPRQEHLLTQPITTDGTPKERTTHPDTHSIPKRQDVPRHLWNVLRSSGQLDEGWIDTEIIDENGVVLVRMTKPVHRSNIHQLEKCVPLAVLQEQNLDFTNAYLQRAYGVTMEEGGLQPVADITHATTSSQEQQTEVLLAQDEKYDRTGTDGEGNRQSVAGLAKAARLDTVVDNNLLVERVLGRVE