NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold SRS043239_WUGC_scaffold_41757

Scaffold SRS043239_WUGC_scaffold_41757


Overview

Basic Information
Taxon OID7000000426 Open in IMG/M
Scaffold IDSRS043239_WUGC_scaffold_41757 Open in IMG/M
Source Dataset NameHuman buccal mucosa microbial communities from NIH, USA - visit 1, subject 675950834
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBaylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43956
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)51 (85.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location
Location NameUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049707Metagenome146N
F095632Metagenome105N

Sequences

Protein IDFamilyRBSSequence
SRS043239_WUGC_scaffold_41757__gene_33175F049707AGGAGVVSEYKSPHNDGHDPYILIWEYGSEVQQAEFIERWAEYEPDTGWTMWYFRLEDGKVMKFRALEWEQKDDVNHLTTIYFTPRKEQQ
SRS043239_WUGC_scaffold_41757__gene_33198F095632GAGMRPLKKGTTMSFKETTGYKVVNFVASTTASITAGAVVSALCPPAGVALTVVYSLGSGVLGSYVGDKAGQQYAENFAETIDSIKTPSNN

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.