7000000426: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 675950834

Overview

Basic Information

• IMG/M Taxon OID: 7000000426
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052975 | Ga0028015
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 675950834
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 31617334
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1
All Organisms → Viruses → Predicted Viral	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036281	Metagenome	170	N
F043991	Metagenome	155	N
F045567	Metagenome	152	N
F049707	Metagenome	146	N
F092232	Metagenome	107	N
F095632	Metagenome	105	N
F101358	Metagenome	102	Y
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
C2036572	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1094
C2042312	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	5573
SRS043239_WUGC_scaffold_15929	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	523
SRS043239_WUGC_scaffold_17625	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	677
SRS043239_WUGC_scaffold_39284	All Organisms → Viruses → Predicted Viral	2859
SRS043239_WUGC_scaffold_41736	All Organisms → Viruses → Predicted Viral	1409
SRS043239_WUGC_scaffold_41757	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	43956

Sequences

Scaffold ID	Protein ID	Family	Sequence
C2036572	C2036572__gene_65729	F043991	PSVIDYFDLNGDLNEEAYEFEDVKLDEYIDKRSNVKPSWIGKYSHQMHFDLPDDTEVSFYKGLNIVYADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGSPSNVHPDFRA
C2042312	C2042312__gene_70183	F092232	MINQAKFIADYNERNRPKFNDKFFQKSDDDIIEDLKDVILSCQRDKFYTIRVEKFEVIDDYAEIQRLLTGEETPTISIKDSDLKILKVTYYTAIGNQEDTFDVLIAVPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTSSASAKTQSITLKTNSNAVKMLRNFFEFKLSDGETFKKLASFSVYLFDHKVTLFEYYLARFGWYKTISEFKFDHVIKVTEEDPQDDEYDTFVVQNSHMKTPIYISAVRSVLDADRILQSFVASFIISINKYATKKFTLDNIYNTDFWVCKLGFNFVSSETSVFTKGNAIIESLENSYDIPTQKRLRLPDEIKSNIYSVLKWMASEFSYIRLKDNLDASSKRIRWSEYIAAMYIMIINLKLRRLPEKPDPNVEVLRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGEGNGKKVAQNIRAVDISQLGIIDVNTSSASDPGVGGMLCPLNDKVFEYNSFTNEPEPNTWDANFDELLKIYRDQKGYTSAIALAEDAGLELTDDRSPESVAFDTEYLGNLIGKIAPTKAFETQLRPAFINMEDSGSIIFED
SRS043239_WUGC_scaffold_15929	SRS043239_WUGC_scaffold_15929__gene_6052	F045567	MRQRDGHDTLTEELEGSITPLLYRAEGEARRPWVRMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDRIDMIDTETCGLVVEVRATVDEDTLPTLGDDEGGGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEMPSL
SRS043239_WUGC_scaffold_17625	SRS043239_WUGC_scaffold_17625__gene_6981	F101358	HLLTQPITTDGMPQERATHPDTHSIPKRQDVPRHQWNVLRSSGQLDEGWIDREIIDKDGTVLVRMTKLVNRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGVMMEDGKLQPVADTTHTTHQNDSTDEQETEVLPTQSGNTYDHLGGDSACQLVGSVAAKASDTEVDNNLLVERVLGRVKQ
SRS043239_WUGC_scaffold_39284	SRS043239_WUGC_scaffold_39284__gene_28690	F105377	VRDFDKLPLLTPEEAFERAWEEGGAAHPVFDRGYQVRNLNDWKAIETLLRQNDVPDITIASFGLKRFEEILDALAMLHERGWRLWQTSANVYVDGEKRPVQAIRAHYRGI
SRS043239_WUGC_scaffold_41736	SRS043239_WUGC_scaffold_41736__gene_33090	F036281	MITLIKVDEGPVDIYELRMKYLAKLKETDGVMLPKFIYRNKELFVTEFKPTCDDQWIMYMTNADGLITKMRIKNGDLMSNGSVLFLAKERKTYNAKEYFDYWTAREGKPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDDLKSKFTRHTITNEKGHQSYDWVLKNVEWAADTIRYF
SRS043239_WUGC_scaffold_41757	SRS043239_WUGC_scaffold_41757__gene_33175	F049707	VVSEYKSPHNDGHDPYILIWEYGSEVQQAEFIERWAEYEPDTGWTMWYFRLEDGKVMKFRALEWEQKDDVNHLTTIYFTPRKEQQ
SRS043239_WUGC_scaffold_41757	SRS043239_WUGC_scaffold_41757__gene_33198	F095632	MRPLKKGTTMSFKETTGYKVVNFVASTTASITAGAVVSALCPPAGVALTVVYSLGSGVLGSYVGDKAGQQYAENFAETIDSIKTPSNN