Scaffold SRS024381_LANL_scaffold_6847

Overview

Basic Information

• Taxon OID: 7000000406
• Scaffold ID: SRS024381_LANL_scaffold_6847
• Source Dataset Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159713063
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4083
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F043991	Metagenome	155	N

Sequences

Protein ID	Family	RBS	Sequence
SRS024381_LANL_scaffold_6847__gene_6694	F018385	GGAG	MAEYVNRWDPYSELSIEKDRDPVLDDHLIYGTNVEHYTLTVYSPEGRVSKYWNARILKDDLGRCRIACPRDGKILCFSWFDWDAHMFMHDGINELVFAPKLNSKSPQSLWNKKEVK
SRS024381_LANL_scaffold_6847__gene_6698	F043991	AGGAG	MGKKKPSAVDGFDLNGNVIEEANEFDGVLIEEWVNQRSPLKPSWVGRYSDQMHFDLKDGTEVSFYKRPEIVYGDILFAEGVRTILFKCRQKKNLTRFISRVLKLAEMGPSSVHPDLRA