Scaffold SRS024381_LANL_scaffold_20904

Overview

Basic Information

• Taxon OID: 7000000406
• Scaffold ID: SRS024381_LANL_scaffold_20904
• Source Dataset Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159713063
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2945
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F036281	Metagenome	170	N
F074985	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
SRS024381_LANL_scaffold_20904__gene_22465	F074985	AGGAGG	MELTDGGWYKTPRIIKGKDFLAHIHDTYASGNAMYVEFKASEGEVRILEYRQLYDVDTENAVLFTINTCPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRINLEQFDQIWLDQTFQKLHPVIVNHDGKFWHVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWSLDDPTEEIKDLENIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSETGEQKYLLDHIKAMHID
SRS024381_LANL_scaffold_20904__gene_22466	F036281	GAG	MFSIIRVSEGPVDIYELRMRYLAKLKETDGVMLPTFIYRNKSLFITEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYDAQEYFDYWTAREGKPAPFFYESRQYHVKSFMRVPGSSDLWITAERETGHWYTFRMSDAQKSKFTRHTMTNAKGHQSYDWVLENVEWAADTIRYF
SRS024381_LANL_scaffold_20904__gene_22467	F027205	AGGA	VASRLIVSADDILKAVKDSEEFEKKALSEARKRDRAEGKPPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEQDLFAFMDYLLDEYDIPKRIRK