Scaffold SRS047100_WUGC_scaffold_45919

Overview

Basic Information

• Taxon OID: 7000000369
• Scaffold ID: SRS047100_WUGC_scaffold_45919
• Source Dataset Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764811490
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7716
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas gingivalis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040149	Metagenome	162	N
F055792	Metagenome	138	N

Sequences

Protein ID	Family	RBS	Sequence
SRS047100_WUGC_scaffold_45919__gene_59462	F040149	GAGG	VADEGAKEFRWKVLIKEQGIPVLFIEVVAWYDGRVSSSEILSSFGIALEREPRLSPVWHHDSEDAIHDFIYDISVPKGHALTAVRERETVVMQLLNIHRMF
SRS047100_WUGC_scaffold_45919__gene_59463	F055792	GAGG	MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLSIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLKTLQKEGYILFEGSMLPCEARRVDSRSPIKSLDLEPRIIGKTMKPIALPHVARLDEGIPLQRIGSLRDLLVTPDVSQADDLQTSREEGTDLLQLMGIIARKYQLFHTFVIISSASLRA