Scaffold SRS056259_LANL_scaffold_50657

Overview

Basic Information

• Taxon OID: 7000000297
• Scaffold ID: SRS056259_LANL_scaffold_50657
• Source Dataset Name: Human stool microbial communities from NIH, USA - visit 2, subject 764325968
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28274
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (26.32%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050794	Metagenome	145	N
F064725	Metagenome	128	N
F077313	Metagenome	117	N

Sequences

Protein ID	Family	RBS	Sequence
SRS056259_LANL_scaffold_50657__gene_111777	F050794	AGG	MTEFNERLSDKIGIECTMDILLPTDDDNANIIIEYNGIIKKLMREAGKLELDTDAIENMMRDLLNELKDDVDLNILIFDVTQLLIKYNLFRLDAITEQEFKDSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYNYISSI
SRS056259_LANL_scaffold_50657__gene_111780	F077313	N/A	MGKYVIKRKIPKYQEAGEVGSYMLGNMDGIQGLGMEPLVNTNKGLPAQASPLGIYSMDTPDRLMDKYDTAFEKKDMNDMFPASFKGSLQRIAENYQDNAITFNNVTVNDVDKSKTGSGETDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGVKTANVVGTVMSGIGGVLGLARNVFSGMASEQGTRTNIRLAQEREARQRRQSQMRYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVEQPGEAPMEAMGQKHVDGGTPVSLEEGTEVITDDTTIESDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALDKLKKNDKIDDENTRRLNASVLSKAINDSNETVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEDDVAEAKKELLKKVAGIRQKMEKGGSSLFDYLLTFRPVENKYNNKDNTFGYQRQGQDGSYGGINADERLEYYKTFMPLAYDAYMSAPKATAAKALQDAIYNTTGGWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKFGQYSSSRPMIGLDVVTEDQHKALNDAGITHFSQLFSDKNKDIVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMNIGDVEDPDVKLDMPELIDASTLPKTNTNTNTGKSDNNRGGRNIVGGGLDFPEVFRMTPGPVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGRYINEVEQGNVAQRTWADNVNSQSWANTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
SRS056259_LANL_scaffold_50657__gene_111789	F064725	N/A	MTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGSGLRRDCAADKYRDKYAWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKLI